Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20culicis_20[genbank_20GCA_5F000442495.1_202013-07-31] 12,772 sequences; 27,283,778 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq9219 131 5e-25 seq7322 131 5e-25 seq7561 89.7 2e-12 seq2096 89.7 2e-12 seq6636 87.8 5e-12 >seq9219 Length=2396 Score = 131 bits (144), Expect = 5e-25 Identities = 180/250 (72%), Gaps = 4/250 (2%) Strand=Plus/Plus Query 349562 AAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACT 349621 |||||||| ||| || || | |||||||| ||| |||||||||||||||||| ||| Sbjct 632 AAAATGAAAAAAACAGCAGAGGATTATTTAGGAGAAGAAGTAACTGATGCTGTTATAACT 691 Query 349622 GTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCG 349681 || ||||| || ||||| ||| || | || ||||||||||||||||| || || Sbjct 692 GTGCCAGCATACTTTAACGATAGTCAAAGACAAGCGACAAAAGATGCTGGCAGGATAGCA 751 Query 349682 GGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTT 349741 ||| | || ||| || || || || ||||| ||||||||||| | || | ||| | Sbjct 752 GGGCTTAACGTTAAGAGGATTATAAACGAACCGACTGCTGCAGCGCTAGCTTTTGGTTTA 811 Query 349742 GATAAA--ATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTT 349799 |||||| | | | | | | ||| ||| | || | ||| | ||||||||||| | Sbjct 812 GATAAATCAGAAAAGTCTGATAGAAAGATAGTAGTA--TATGACCTTGGTGGTGGTACAT 869 Query 349800 TTGATGTATC 349809 |||||||||| Sbjct 870 TTGATGTATC 879 >seq7322 Length=2437 Score = 131 bits (144), Expect = 5e-25 Identities = 180/250 (72%), Gaps = 4/250 (2%) Strand=Plus/Plus Query 349562 AAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACT 349621 |||||||| ||| || || | |||||||| ||| |||||||||||||||||| ||| Sbjct 692 AAAATGAAAAAAACAGCAGAGGATTATTTAGGAGAAGAAGTAACTGATGCTGTTATAACT 751 Query 349622 GTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCG 349681 || ||||| || ||||| ||| || | || ||||||||||||||||| || || Sbjct 752 GTGCCAGCATACTTTAACGATAGTCAAAGACAAGCGACAAAAGATGCTGGCAGGATAGCA 811 Query 349682 GGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTT 349741 ||| | || ||| || || || || ||||| ||||||||||| | || | ||| | Sbjct 812 GGGCTTAACGTTAAGAGGATTATAAACGAACCGACTGCTGCAGCGCTAGCTTTTGGTTTA 871 Query 349742 GATAAA--ATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTT 349799 |||||| | | | | | | ||| ||| | || | ||| | ||||||||||| | Sbjct 872 GATAAATCAGAAAAGTCTGATAGAAAGATAGTAGTA--TATGACCTTGGTGGTGGTACAT 929 Query 349800 TTGATGTATC 349809 |||||||||| Sbjct 930 TTGATGTATC 939 >seq7561 Length=2662 Score = 89.7 bits (98), Expect = 2e-12 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || || || || || || ||||| || || || || || || | | || || || || Sbjct 2637 AGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTACGGCCCTCC 2578 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || ||||||||||| || || ||||| || ||||| || || || || ||| Sbjct 2577 TCCAGCTGCTTACCAGCAAAGATCAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCC 2518 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || || || || || || || || |||| || | || || || || | | ||| Sbjct 2517 TGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCACCTCCAGGGCGATCGTC 2458 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || ||||| || || || ||||| |||||||| Sbjct 2457 TTGCCGGTCAGCGTCTTCACAAAGATCTGCAT 2426 >seq2096 Length=2354 Score = 89.7 bits (98), Expect = 2e-12 Identities = 196/288 (68%), Gaps = 18/288 (6%) Strand=Plus/Plus Query 349607 GATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGAT 349666 |||| | |||| |||||||| |||||||||||||| ||||||| ||| | | || Sbjct 610 GATGTTATTATCACTGTACCTGCCTATTTTAATGAAACCCAGCG----CCAAGATACTAT 665 Query 349667 GCTGGCAGCA----TTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGC 349722 | |||||| | | || ||||| || || | || | ||||| || || ||||| Sbjct 666 ATTAGCAGCAAGATTAGTAGGTTTAAACGTGATACGTTTGTTGAATGAGCCAACGGCTGC 725 Query 349723 AGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaa-aaaaaTATTCTTATTTTTG 349781 || ||||| ||||| ||| ||| | | ||||| | |||| | | | || | Sbjct 726 TGCTATTGCTTATGGTATTGGTAATTTAA------AAGAAGGCATATATGC-TGTATTCG 778 Query 349782 ATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAG 349841 |||||||||| || || |||||| | || | ||| | | || || ||||||| | Sbjct 779 ATTTAGGTGGCGGCACGTTTGATATTTCTATCTTAAAATTAATGGAAGGTGTTTTTGATG 838 Query 349842 TTAAAGCAACTGCTGGTGAT-ACACATCTTGGTGGAGAAGATTTTGAT 349888 ||| ||| ||| | || ||| | ||| | || ||||| ||||||||| Sbjct 839 TTATAGCTACTTCAGGGGATAATGCAT-TAGGAGGAGATGATTTTGAT 885 >seq6636 Length=1250 Score = 87.8 bits (96), Expect = 5e-12 Identities = 90/118 (76%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 391025 AATGGCATTACCTCCGTGCCATATTTTAGCTCAATTTAATGTTGTAAAAGATGAACTTTC 391084 |||||| ||||| || |||||||| ||| ||||| || | | || || |||| || Sbjct 387 AATGGCGTTACCACCTTGCCATATATTATTCCAATTCTATATAGCTAACAATAAACTATC 328 Query 391085 TTGTTCATTATATCAGAGAAGTGGAGATGTAGGTTTAGGAGTTCCATTTAATATTGCA 391142 |||| | ||||||| ||||||| ||| || |||||| ||||| |||||||||||| Sbjct 327 TTGTCAAGTATATCAAAGAAGTGCCGATATATTTTTAGGTGTTCCTTTTAATATTGCA 270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515006441875916