Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20culicis_20[genbank_20GCA_5F000442495.1_202013-07-31] 12,772 sequences; 27,283,778 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq4130 127 2e-24 seq2683 127 2e-24 seq716 127 2e-24 seq393 127 2e-24 >seq4130 Length=3478 Score = 127 bits (140), Expect = 2e-24 Identities = 396/609 (65%), Gaps = 12/609 (2%) Strand=Plus/Minus Query 29863 GAGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGTAGACGTGAGCGTCTCCCAGGTTGTG 29922 |||||| || ||||| ||||||| | | ||| ||||| ||||| ||||| |||| Sbjct 2732 GAGCTGCTGCTGCAGCGCGTCCACGTGGTTCTTGTACACGTGCGCGTCGCCCAGCGTGTG 2673 Query 29923 GACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTA 29982 || | ||| || || | ||||| || | | || || | | || |||| | ||| Sbjct 2672 GATGAGCTCCCCGGGCTTCAGCCCCGTCGCCTTGGCGATGAGGATAGTCAGGAAGGCGTA 2613 Query 29983 GCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACA 30042 ||||||||| ||||| || ||||| |||||||| | | |||||| ||| || Sbjct 2612 CGAGGCGATGTTGAAGGGCACACCGAGGCCCATGTCGCAGCTGCGCTGGTACAGCATGCA 2553 Query 30043 CGAGAGCTC-TCCGTC-----GCTCACGTAAAACTGACACATGGCGTGGCACGGAGGAAG 30096 ||||| | ||| | ||||||| ||||| | | | ||||||||| || || Sbjct 2552 GCTCAGCTCCTGCGTGTTGGGGTTCACGTAGAACTGGCCGAGGAGGTGGCACGGCGGCAG 2493 Query 30097 AGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGG 30156 ||||| | | | | |||||||| || | || | || | ||| |||| Sbjct 2492 CGCCATCTTGTCAAGCGCGGCCGGGTTCCACGCCGTGAAGAGCAGCCGGCGGTCG-CTGG 2434 Query 30157 GTTGTTCCTGATGAGGTCCACGGCGTTTTGC---AGCTGATCCACCCCCATCCCCGAGTA 30213 | | || | |||| | || || | || | ||| || || ||| | || ||| Sbjct 2433 GAT--TCGTCTTGAGCGTCTCGACGATGCGCTTGATCTGGTCGACGCCCTTGCCGTCGTA 2376 Query 30214 GTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGG 30273 || | | | | |||||| || || ||||| || | ||||||||| ||||| || || Sbjct 2375 GTTGTCGTTGAAGGACGTGTAGTCGGCGCCGAAGTGGCGCCACTGGAAGCCGTAGACGGG 2316 Query 30274 TCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACC 30333 |||||||| |||||| |||| || ||| | |||| | ||| | | | || Sbjct 2315 CCCCAGGTCCATCTCTTCGTAGTGCGTGAGGCCGCGGCTGTCGAGGAAGGCGCGGCTGCC 2256 Query 30334 GTTGGCGTCCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCCTCT 30393 |||| |||||||||| | | ||||| || | |||| || | ||| || ||| | Sbjct 2255 GTTGTCGTCCCAGATGTGGATGCCCTTGTCCGCGAGCAGCTTCGCGTTGGTCTCCCCGCG 2196 Query 30394 GACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAG 30453 | |||||| | ||||||||| ||| | ||| ||||| | ||| ||||||||||| Sbjct 2195 CAGGAACCAGATGAGCTCCTCCGACACGCCGCGCCAGAAGACGCGCTTCGTCGTGAGGAG 2136 Query 30454 GGGAAACTG 30462 || | ||| Sbjct 2135 CGGCAGCTG 2127 >seq2683 Length=3852 Score = 127 bits (140), Expect = 2e-24 Identities = 396/609 (65%), Gaps = 12/609 (2%) Strand=Plus/Minus Query 29863 GAGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGTAGACGTGAGCGTCTCCCAGGTTGTG 29922 |||||| || ||||| ||||||| | | ||| ||||| ||||| ||||| |||| Sbjct 2891 GAGCTGCTGCTGCAGCGCGTCCACGTGGTTCTTGTACACGTGCGCGTCGCCCAGCGTGTG 2832 Query 29923 GACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTA 29982 || | ||| || || | ||||| || | | || || | | || |||| | ||| Sbjct 2831 GATGAGCTCCCCGGGCTTCAGCCCCGTCGCCTTGGCGATGAGGATAGTCAGGAAGGCGTA 2772 Query 29983 GCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACA 30042 ||||||||| ||||| || ||||| |||||||| | | |||||| ||| || Sbjct 2771 CGAGGCGATGTTGAAGGGCACACCGAGGCCCATGTCGCAGCTGCGCTGGTACAGCATGCA 2712 Query 30043 CGAGAGCTC-TCCGTC-----GCTCACGTAAAACTGACACATGGCGTGGCACGGAGGAAG 30096 ||||| | ||| | ||||||| ||||| | | | ||||||||| || || Sbjct 2711 GCTCAGCTCCTGCGTGTTGGGGTTCACGTAGAACTGGCCGAGGAGGTGGCACGGCGGCAG 2652 Query 30097 AGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGG 30156 ||||| | | | | |||||||| || | || | || | ||| |||| Sbjct 2651 CGCCATCTTGTCAAGCGCGGCCGGGTTCCACGCCGTGAAGAGCAGCCGGCGGTCG-CTGG 2593 Query 30157 GTTGTTCCTGATGAGGTCCACGGCGTTTTGC---AGCTGATCCACCCCCATCCCCGAGTA 30213 | | || | |||| | || || | || | ||| || || ||| | || ||| Sbjct 2592 GAT--TCGTCTTGAGCGTCTCGACGATGCGCTTGATCTGGTCGACGCCCTTGCCGTCGTA 2535 Query 30214 GTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGG 30273 || | | | | |||||| || || ||||| || | ||||||||| ||||| || || Sbjct 2534 GTTGTCGTTGAAGGACGTGTAGTCGGCGCCGAAGTGGCGCCACTGGAAGCCGTAGACGGG 2475 Query 30274 TCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACC 30333 |||||||| |||||| |||| || ||| | |||| | ||| | | | || Sbjct 2474 CCCCAGGTCCATCTCTTCGTAGTGCGTGAGGCCGCGGCTGTCGAGGAAGGCGCGGCTGCC 2415 Query 30334 GTTGGCGTCCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCCTCT 30393 |||| |||||||||| | | ||||| || | |||| || | ||| || ||| | Sbjct 2414 GTTGTCGTCCCAGATGTGGATGCCCTTGTCCGCGAGCAGCTTCGCGTTGGTCTCCCCGCG 2355 Query 30394 GACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAG 30453 | |||||| | ||||||||| ||| | ||| ||||| | ||| ||||||||||| Sbjct 2354 CAGGAACCAGATGAGCTCCTCCGACACGCCGCGCCAGAAGACGCGCTTCGTCGTGAGGAG 2295 Query 30454 GGGAAACTG 30462 || | ||| Sbjct 2294 CGGCAGCTG 2286 >seq716 Length=1183 Score = 127 bits (140), Expect = 2e-24 Identities = 396/609 (65%), Gaps = 12/609 (2%) Strand=Plus/Minus Query 29863 GAGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGTAGACGTGAGCGTCTCCCAGGTTGTG 29922 |||||| || ||||| ||||||| | | ||| ||||| ||||| ||||| |||| Sbjct 936 GAGCTGCTGCTGCAGCGCGTCCACGTGGTTCTTGTACACGTGCGCGTCGCCCAGCGTGTG 877 Query 29923 GACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTA 29982 || | ||| || || | ||||| || | | || || | | || |||| | ||| Sbjct 876 GATGAGCTCCCCGGGCTTCAGCCCCGTCGCCTTGGCGATGAGGATAGTCAGGAAGGCGTA 817 Query 29983 GCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACA 30042 ||||||||| ||||| || ||||| |||||||| | | |||||| ||| || Sbjct 816 CGAGGCGATGTTGAAGGGCACACCGAGGCCCATGTCGCAGCTGCGCTGGTACAGCATGCA 757 Query 30043 CGAGAGCTC-TCCGTC-----GCTCACGTAAAACTGACACATGGCGTGGCACGGAGGAAG 30096 ||||| | ||| | ||||||| ||||| | | | ||||||||| || || Sbjct 756 GCTCAGCTCCTGCGTGTTGGGGTTCACGTAGAACTGGCCGAGGAGGTGGCACGGCGGCAG 697 Query 30097 AGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGG 30156 ||||| | | | | |||||||| || | || | || | ||| |||| Sbjct 696 CGCCATCTTGTCAAGCGCGGCCGGGTTCCACGCCGTGAAGAGCAGCCGGCGGTCG-CTGG 638 Query 30157 GTTGTTCCTGATGAGGTCCACGGCGTTTTGC---AGCTGATCCACCCCCATCCCCGAGTA 30213 | | || | |||| | || || | || | ||| || || ||| | || ||| Sbjct 637 GAT--TCGTCTTGAGCGTCTCGACGATGCGCTTGATCTGGTCGACGCCCTTGCCGTCGTA 580 Query 30214 GTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGG 30273 || | | | | |||||| || || ||||| || | ||||||||| ||||| || || Sbjct 579 GTTGTCGTTGAAGGACGTGTAGTCGGCGCCGAAGTGGCGCCACTGGAAGCCGTAGACGGG 520 Query 30274 TCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACC 30333 |||||||| |||||| |||| || ||| | |||| | ||| | | | || Sbjct 519 CCCCAGGTCCATCTCTTCGTAGTGCGTGAGGCCGCGGCTGTCGAGGAAGGCGCGGCTGCC 460 Query 30334 GTTGGCGTCCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCCTCT 30393 |||| |||||||||| | | ||||| || | |||| || | ||| || ||| | Sbjct 459 GTTGTCGTCCCAGATGTGGATGCCCTTGTCCGCGAGCAGCTTCGCGTTGGTCTCCCCGCG 400 Query 30394 GACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAG 30453 | |||||| | ||||||||| ||| | ||| ||||| | ||| ||||||||||| Sbjct 399 CAGGAACCAGATGAGCTCCTCCGACACGCCGCGCCAGAAGACGCGCTTCGTCGTGAGGAG 340 Query 30454 GGGAAACTG 30462 || | ||| Sbjct 339 CGGCAGCTG 331 >seq393 Length=3299 Score = 127 bits (140), Expect = 2e-24 Identities = 396/609 (65%), Gaps = 12/609 (2%) Strand=Plus/Minus Query 29863 GAGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGTAGACGTGAGCGTCTCCCAGGTTGTG 29922 |||||| || ||||| ||||||| | | ||| ||||| ||||| ||||| |||| Sbjct 2152 GAGCTGCTGCTGCAGCGCGTCCACGTGGTTCTTGTACACGTGCGCGTCGCCCAGCGTGTG 2093 Query 29923 GACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTA 29982 || | ||| || || | ||||| || | | || || | | || |||| | ||| Sbjct 2092 GATGAGCTCCCCGGGCTTCAGCCCCGTCGCCTTGGCGATGAGGATAGTCAGGAAGGCGTA 2033 Query 29983 GCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACA 30042 ||||||||| ||||| || ||||| |||||||| | | |||||| ||| || Sbjct 2032 CGAGGCGATGTTGAAGGGCACACCGAGGCCCATGTCGCAGCTGCGCTGGTACAGCATGCA 1973 Query 30043 CGAGAGCTC-TCCGTC-----GCTCACGTAAAACTGACACATGGCGTGGCACGGAGGAAG 30096 ||||| | ||| | ||||||| ||||| | | | ||||||||| || || Sbjct 1972 GCTCAGCTCCTGCGTGTTGGGGTTCACGTAGAACTGGCCGAGGAGGTGGCACGGCGGCAG 1913 Query 30097 AGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGG 30156 ||||| | | | | |||||||| || | || | || | ||| |||| Sbjct 1912 CGCCATCTTGTCAAGCGCGGCCGGGTTCCACGCCGTGAAGAGCAGCCGGCGGTCG-CTGG 1854 Query 30157 GTTGTTCCTGATGAGGTCCACGGCGTTTTGC---AGCTGATCCACCCCCATCCCCGAGTA 30213 | | || | |||| | || || | || | ||| || || ||| | || ||| Sbjct 1853 GAT--TCGTCTTGAGCGTCTCGACGATGCGCTTGATCTGGTCGACGCCCTTGCCGTCGTA 1796 Query 30214 GTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGG 30273 || | | | | |||||| || || ||||| || | ||||||||| ||||| || || Sbjct 1795 GTTGTCGTTGAAGGACGTGTAGTCGGCGCCGAAGTGGCGCCACTGGAAGCCGTAGACGGG 1736 Query 30274 TCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACC 30333 |||||||| |||||| |||| || ||| | |||| | ||| | | | || Sbjct 1735 CCCCAGGTCCATCTCTTCGTAGTGCGTGAGGCCGCGGCTGTCGAGGAAGGCGCGGCTGCC 1676 Query 30334 GTTGGCGTCCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCCTCT 30393 |||| |||||||||| | | ||||| || | |||| || | ||| || ||| | Sbjct 1675 GTTGTCGTCCCAGATGTGGATGCCCTTGTCCGCGAGCAGCTTCGCGTTGGTCTCCCCGCG 1616 Query 30394 GACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAG 30453 | |||||| | ||||||||| ||| | ||| ||||| | ||| ||||||||||| Sbjct 1615 CAGGAACCAGATGAGCTCCTCCGACACGCCGCGCCAGAAGACGCGCTTCGTCGTGAGGAG 1556 Query 30454 GGGAAACTG 30462 || | ||| Sbjct 1555 CGGCAGCTG 1547 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406247154231024