Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20culicis_20[genbank_20GCA_5F000442495.1_202013-07-31] 12,772 sequences; 27,283,778 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq7561 100 2e-16 seq5572 82.4 7e-11 >seq7561 Length=2662 Score = 100 bits (110), Expect = 2e-16 Identities = 164/235 (70%), Gaps = 6/235 (3%) Strand=Plus/Plus Query 26986 CCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGT 27045 |||||||||| ||||| || || |||||||||||| | || | || || ||||| || Sbjct 2424 CCATGCAGATCTTTGTGAAGACGCTGACCGGCAAGACGATCGCCCTGGAGGTGGAGGCGA 2483 Query 27046 CCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATC 27105 |||| |||| |||| || || || || || ||||| || ||||| || || || | Sbjct 2484 GCGACACGATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCTCCGGACC 2543 Query 27106 AACAGCGTTTAATATACGCCGGCAAACAATTGGAAGA---CAGTTCGACCGTTTCCGATT 27162 | ||||| | || | || || || || |||| || | || || || | || | Sbjct 2544 AGCAGCGCCTGATCTTTGCTGGTAAGCAGCTGGAGGAGGGCCGTACGCTCG---CGGACT 2600 Query 27163 ACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||||| || ||||||||||| | || |||| | ||| |||| || ||||| Sbjct 2601 ACAACATCCAGAAGGAGTCGACGCTGCACCTGGTGCTCCGTCTGCGCGGCGGCAT 2655 >seq5572 Length=1533 Score = 82.4 bits (90), Expect = 7e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || ||||||||||||||| | || | || || || || || Sbjct 651 CATGCAGATCTTCGTGAAGACTCTGACCGGCAAGACGATCGCCCTCGAGGTCGAGGCGAG 710 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||| | || |||| || || || || || ||||| || ||||| || || || || Sbjct 711 CGACACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCA 770 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||| | || | ||| ||||| || | || || | || | | || ||||| Sbjct 771 GCAGCGCCTCATCTTCGCTGGCAAGCAGCTCGAGGAGGGCCGCACGCTCGCGGACTACAA 830 Query 27167 CATTCAAAAGGAGTCGAC 27184 |||||| |||||||| || Sbjct 831 CATTCAGAAGGAGTCCAC 848 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434848965277440