Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20culicis_20[genbank_20GCA_5F000442495.1_202013-07-31] 12,772 sequences; 27,283,778 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq4920 114 1e-20 seq4861 114 1e-20 seq7561 104 2e-17 >seq4920 Length=845 Score = 114 bits (126), Expect = 1e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | ||||| || |||||| ||| || || || || || || || || || || | Sbjct 543 GCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCC 602 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 || || ||||| ||||| ||||| || || ||||||||||| | || | || ||| || Sbjct 603 CTCCTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTT 662 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGAT 39248 |||| ||| ||| || | || | | ||| ||||||| |||||| |||| | ||| Sbjct 663 GTCCTGGATCTTCGCCTTCACGCTCTCGATCGTGTCGCTCGCCTCCACCTCCAGGGCGAT 722 Query 39249 ACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || || |||||||| || || ||||||||||| Sbjct 723 CGTCTTGCCGGTCAGCGTCTTCACGAAGATTTGCAT 758 >seq4861 Length=995 Score = 114 bits (126), Expect = 1e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | ||||| || |||||| ||| || || || || || || || || || || | Sbjct 447 GCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCC 388 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 || || ||||| ||||| ||||| || || ||||||||||| | || | || ||| || Sbjct 387 CTCCTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTT 328 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGAT 39248 |||| ||| ||| || | || | | ||| ||||||| |||||| |||| | ||| Sbjct 327 GTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCACCTCCAGGGCGAT 268 Query 39249 ACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || || |||||||| || || ||||||||||| Sbjct 267 CGTCTTGCCGGTCAGCGTCTTCACGAAGATTTGCAT 232 >seq7561 Length=2662 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||| || ||||| ||| || || || || || || || || || || | || || Sbjct 2635 CACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTACGGCCCTCCTC 2576 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| || || ||||| || || ||||||||||| | || | || ||| |||||| Sbjct 2575 CAGCTGCTTACCAGCAAAGATCAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTG 2516 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 ||| ||| || | || | | ||| ||||||| |||||| |||| | ||| | || Sbjct 2515 GATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCACCTCCAGGGCGATCGTCTT 2456 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || |||||||| || |||||||| ||||| Sbjct 2455 GCCGGTCAGCGTCTTCACAAAGATCTGCAT 2426 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429478737468836