Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20culicis_20[genbank_20GCA_5F000442495.1_202013-07-31] 12,772 sequences; 27,283,778 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq4130 91.5 1e-13 seq2683 91.5 1e-13 seq716 91.5 1e-13 seq393 91.5 1e-13 >seq4130 Length=3478 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 30015 CGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGA 30074 |||| || | ||||||||| ||||| || || |||||||| |||||| |||| || Sbjct 2346 CGAAGTGGCGCCACTGGAAGCCGTAGACGGGCCCCAGGTCCATCTCTTCGTAGTGCGTGA 2287 Query 30075 AGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCT 30134 ||| | |||| | ||| | | | |||||| |||||||||| | | ||||| | Sbjct 2286 GGCCGCGGCTGTCGAGGAAGGCGCGGCTGCCGTTGTCGTCCCAGATGTGGATGCCCTTGT 2227 Query 30135 CGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGG 30194 | | |||| || | ||| || ||| | | |||||| | ||||||||| ||| Sbjct 2226 CCGCGAGCAGCTTCGCGTTGGTCTCCCCGCGCAGGAACCAGATGAGCTCCTCCGACACGC 2167 Query 30195 CCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAACTG 30234 | ||| ||||| | ||| ||||||||||| || | ||| Sbjct 2166 CGCGCCAGAAGACGCGCTTCGTCGTGAGGAGCGGCAGCTG 2127 >seq2683 Length=3852 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 30015 CGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGA 30074 |||| || | ||||||||| ||||| || || |||||||| |||||| |||| || Sbjct 2505 CGAAGTGGCGCCACTGGAAGCCGTAGACGGGCCCCAGGTCCATCTCTTCGTAGTGCGTGA 2446 Query 30075 AGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCT 30134 ||| | |||| | ||| | | | |||||| |||||||||| | | ||||| | Sbjct 2445 GGCCGCGGCTGTCGAGGAAGGCGCGGCTGCCGTTGTCGTCCCAGATGTGGATGCCCTTGT 2386 Query 30135 CGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGG 30194 | | |||| || | ||| || ||| | | |||||| | ||||||||| ||| Sbjct 2385 CCGCGAGCAGCTTCGCGTTGGTCTCCCCGCGCAGGAACCAGATGAGCTCCTCCGACACGC 2326 Query 30195 CCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAACTG 30234 | ||| ||||| | ||| ||||||||||| || | ||| Sbjct 2325 CGCGCCAGAAGACGCGCTTCGTCGTGAGGAGCGGCAGCTG 2286 >seq716 Length=1183 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 30015 CGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGA 30074 |||| || | ||||||||| ||||| || || |||||||| |||||| |||| || Sbjct 550 CGAAGTGGCGCCACTGGAAGCCGTAGACGGGCCCCAGGTCCATCTCTTCGTAGTGCGTGA 491 Query 30075 AGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCT 30134 ||| | |||| | ||| | | | |||||| |||||||||| | | ||||| | Sbjct 490 GGCCGCGGCTGTCGAGGAAGGCGCGGCTGCCGTTGTCGTCCCAGATGTGGATGCCCTTGT 431 Query 30135 CGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGG 30194 | | |||| || | ||| || ||| | | |||||| | ||||||||| ||| Sbjct 430 CCGCGAGCAGCTTCGCGTTGGTCTCCCCGCGCAGGAACCAGATGAGCTCCTCCGACACGC 371 Query 30195 CCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAACTG 30234 | ||| ||||| | ||| ||||||||||| || | ||| Sbjct 370 CGCGCCAGAAGACGCGCTTCGTCGTGAGGAGCGGCAGCTG 331 >seq393 Length=3299 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 30015 CGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGA 30074 |||| || | ||||||||| ||||| || || |||||||| |||||| |||| || Sbjct 1766 CGAAGTGGCGCCACTGGAAGCCGTAGACGGGCCCCAGGTCCATCTCTTCGTAGTGCGTGA 1707 Query 30075 AGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCT 30134 ||| | |||| | ||| | | | |||||| |||||||||| | | ||||| | Sbjct 1706 GGCCGCGGCTGTCGAGGAAGGCGCGGCTGCCGTTGTCGTCCCAGATGTGGATGCCCTTGT 1647 Query 30135 CGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGG 30194 | | |||| || | ||| || ||| | | |||||| | ||||||||| ||| Sbjct 1646 CCGCGAGCAGCTTCGCGTTGGTCTCCCCGCGCAGGAACCAGATGAGCTCCTCCGACACGC 1587 Query 30195 CCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAACTG 30234 | ||| ||||| | ||| ||||||||||| || | ||| Sbjct 1586 CGCGCCAGAAGACGCGCTTCGTCGTGAGGAGCGGCAGCTG 1547 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406099977143992