Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20culicis_20[genbank_20GCA_5F000442495.1_202013-07-31] 12,772 sequences; 27,283,778 total letters Query= NC_030901.1 Length=92618 Score E Sequences producing significant alignments: (Bits) Value seq5035 82.4 5e-11 seq3719 82.4 5e-11 >seq5035 Length=1328 Score = 82.4 bits (90), Expect = 5e-11 Identities = 93/124 (75%), Gaps = 3/124 (2%) Strand=Plus/Plus Query 46816 CCACCCTCACGTCGCTCTGATGCCGGATGCACACGGCGGCAAAGGATCTGCCGTTGGCAC 46875 |||||| |||||| | ||||| |||| |||||||||| || | | || || || Sbjct 516 CCACCC---CGTCGCCATCATGCCAGATGTCCACGGCGGCATCGGGTGCACGGTCGGGAC 572 Query 46876 GGTGATACCCACGGTGGACGCCGTGATCCCGGCCGCGGTCGGCGTGGACATCGGGTGCGG 46935 |||||| || ||| | ||| ||||||| ||| |||||||||||||| |||||||| Sbjct 573 GGTGATCCCGACGAGCGGCGCGCTGATCCCCGCCAGCGTCGGCGTGGACATTGGGTGCGG 632 Query 46936 CATG 46939 |||| Sbjct 633 CATG 636 >seq3719 Length=1599 Score = 82.4 bits (90), Expect = 5e-11 Identities = 93/124 (75%), Gaps = 3/124 (2%) Strand=Plus/Minus Query 46816 CCACCCTCACGTCGCTCTGATGCCGGATGCACACGGCGGCAAAGGATCTGCCGTTGGCAC 46875 |||||| |||||| | ||||| |||| |||||||||| || | | || || || Sbjct 1150 CCACCC---CGTCGCCATCATGCCAGATGTCCACGGCGGCATCGGGTGCACGGTCGGGAC 1094 Query 46876 GGTGATACCCACGGTGGACGCCGTGATCCCGGCCGCGGTCGGCGTGGACATCGGGTGCGG 46935 |||||| || ||| | ||| ||||||| ||| |||||||||||||| |||||||| Sbjct 1093 GGTGATCCCGACGAGCGGCGCGCTGATCCCCGCCAGCGTCGGCGTGGACATTGGGTGCGG 1034 Query 46936 CATG 46939 |||| Sbjct 1033 CATG 1030 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 296206685659468