Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20culicis_20[genbank_20GCA_5F000442495.1_202013-07-31] 12,772 sequences; 27,283,778 total letters Query= NC_030936.1 Length=93843 Score E Sequences producing significant alignments: (Bits) Value seq5035 91.5 9e-14 seq3719 91.5 9e-14 >seq5035 Length=1328 Score = 91.5 bits (100), Expect = 9e-14 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 47683 CGTCGCCCTCATGCCGGATGCACACGGCGGCAAAGGATCTGCCGTCGGCACGGTGATTCC 47742 ||||||| ||||||| |||| |||||||||| || | | ||||| |||||||| || Sbjct 522 CGTCGCCATCATGCCAGATGTCCACGGCGGCATCGGGTGCACGGTCGGGACGGTGATCCC 581 Query 47743 CACGGTGGACGCCGTGATCCCGGCCGCGGTCGGCGTGGACATCGGCTGCGGCATG 47797 ||| | ||| ||||||| ||| |||||||||||||| || ||||||||| Sbjct 582 GACGAGCGGCGCGCTGATCCCCGCCAGCGTCGGCGTGGACATTGGGTGCGGCATG 636 >seq3719 Length=1599 Score = 91.5 bits (100), Expect = 9e-14 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 47683 CGTCGCCCTCATGCCGGATGCACACGGCGGCAAAGGATCTGCCGTCGGCACGGTGATTCC 47742 ||||||| ||||||| |||| |||||||||| || | | ||||| |||||||| || Sbjct 1144 CGTCGCCATCATGCCAGATGTCCACGGCGGCATCGGGTGCACGGTCGGGACGGTGATCCC 1085 Query 47743 CACGGTGGACGCCGTGATCCCGGCCGCGGTCGGCGTGGACATCGGCTGCGGCATG 47797 ||| | ||| ||||||| ||| |||||||||||||| || ||||||||| Sbjct 1084 GACGAGCGGCGCGCTGATCCCCGCCAGCGTCGGCGTGGACATTGGGTGCGGCATG 1030 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 300126075477168