Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20culicis_20[genbank_20GCA_5F000442495.1_202013-07-31] 12,772 sequences; 27,283,778 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq4861 158 9e-34 seq4920 154 1e-32 seq7561 143 2e-29 seq5572 125 5e-24 >seq4861 Length=995 Score = 158 bits (174), Expect = 9e-34 Identities = 174/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || | ||| | || ||||||||| |||||| |||||| ||||||||||| || ||| Sbjct 458 CCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCG 399 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || ||| | || || |||||||| || |||||||||| |||||||| || | ||| Sbjct 398 AGCGTGCGGCCCTCCTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGAGGG 339 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCAC 44289 | || ||||| ||| |||||| ||||| |||| | || |||||| | ||||| Sbjct 338 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCAC-GTTCTCGATCGTGTCGCTCGCCTCCAC 280 Query 44290 CTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||||| | |||||||| || || || ||||||||||||||||||||| Sbjct 279 CTCCAGGGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATTTGCATG 231 >seq4920 Length=845 Score = 154 bits (170), Expect = 1e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || | ||| | || ||||||||| |||||| |||||| ||||||||||| || ||| Sbjct 532 CCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCG 591 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || ||| | || || |||||||| || |||||||||| |||||||| || | ||| Sbjct 592 AGCGTGCGGCCCTCCTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGAGGG 651 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACC 44290 | || ||||| ||| |||||| ||||| | | || |||||| | |||||| Sbjct 652 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGCTCTCGATCGTGTCGCTCGCCTCCACC 711 Query 44291 TCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 |||| | |||||||| || || || ||||||||||||||||||||| Sbjct 712 TCCAGGGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATTTGCATG 759 >seq7561 Length=2662 Score = 143 bits (158), Expect = 2e-29 Identities = 173/233 (74%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | | ||||||||| ||||| |||||| ||||||||||| || Sbjct 2656 CATGCCGCCGCGCAGACGGAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTC 2597 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 ||||| || | || ||||||||||| || |||||||||| |||||||| || | Sbjct 2596 CGCGAGCGTACGGCCCTCCTCCAGCTGCTTACCAGCAAAGATCAGGCGCTGCTGGTCCGG 2537 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 ||| | || ||||| ||| |||||| |||| | |||| | || |||||| | | Sbjct 2536 AGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTC-ACGTTCTCGATCGTGTCGCTCGCCT 2478 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||||||||| | |||||||| || || || |||||||| ||||| |||||| Sbjct 2477 CCACCTCCAGGGCGATCGTCTTGCCGGTCAGCGTCTTCACAAAGATCTGCATG 2425 >seq5572 Length=1533 Score = 125 bits (138), Expect = 5e-24 Identities = 160/218 (73%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 44125 CAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTC 44184 || ||| ||||| |||||| |||||| || |||||||| || ||||| ||| | || Sbjct 864 CAGCACGAGGTGCAGCGTGGACTCCTTCTGAATGTTGTAGTCCGCGAGCGTGCGGCCCTC 805 Query 44185 GTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTC 44244 || |||||||| || || ||||| | |||||||| || | || | || ||||| || Sbjct 804 CTCGAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTC 745 Query 44245 CGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCG 44303 | ||||| ||||| |||| | ||||||||| | || ||||| | | |||| Sbjct 744 CTGGATCTTGGCCTTCAC-GTTCTCGATGGTGTCGCTCGCCTCGACCTCGAGGGCGATCG 686 Query 44304 TCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGATG 44341 |||| || || || |||||||||||||| ||||||||| Sbjct 685 TCTTGCCGGTCAGAGTCTTCACGAAGATCTGCATGATG 648 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359934364344324