Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20culicis_20[genbank_20GCA_5F000482145.1_202013-10-25] 3,002 sequences; 23,587,153 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq1609 141 2e-28 seq866 131 4e-25 >seq1609 Length=2085 Score = 141 bits (156), Expect = 2e-28 Identities = 314/466 (67%), Gaps = 9/466 (2%) Strand=Plus/Plus Query 230179 GAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCC 230238 ||||| ||| ||| || | | || || || || | || ||||| |||||| || Sbjct 1140 GAGCGGCTCATCGGCTTCGCGGCCGTCGAGGGCATCTTCTTCTCCGGCTCCTTCTGCTCC 1199 Query 230239 ATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATC 230298 ||||| ||||| ||| || |||||||| |||||| | |||||| ||||| Sbjct 1200 ATCTTCTGGCTCAAGAAGCGCGGCGTGATGCCCGGCCTCACCTTCAGCAACGAGCTCATC 1259 Query 230299 AGTCGCGACGAGGGTCTCCATCAAC-AGTTCGGCGAGCTTATGTATTCAA-AGC----TC 230352 ||||||||||| || || || | | |||| | || |||| ||| ||| || Sbjct 1260 TCGCGCGACGAGGGCCTGCA-CACCGACTTCGCCTGCCTGCTGTA--CAACAGCCACATC 1316 Query 230353 CAGAACAAGCTACCATTCGAGACGGTCAAACAAATCATTACAGAAGCAGTTGAAAACGAA 230412 | ||||||| || |||| || | ||||| || || || || | | ||| Sbjct 1317 AAACACAAGCTGCCGCGCGAGCGCGTGCTGGACATCATCACCGACGCCGTCGTCATCGAG 1376 Query 230413 AAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGGCATGAACGCTGAACTTATG 230472 ||||||||||| || ||||| | || ||||| || ||||||||||| || || ||| Sbjct 1377 AAGGAGTTCATCTGCGACGCGCTGCCCGTGCGCCTCATCGGCATGAACGCCGACCTCATG 1436 Query 230473 GGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAAAGTG 230532 | ||||||||||| ||||| || |||||| | | || | || || ||||| Sbjct 1437 AGCCAGTACATCGAGTTCGTCGCGGACCGCCTGCTCGTGTCGCTGGGCCTGGAGAAGCAC 1496 Query 230533 TACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACCAAC 230592 |||||||| | |||||||| | || |||||| | || || || || ||||||||| Sbjct 1497 TACAACTCCACCAACCCCTTCGACTTCATGGAGATGATCTCCCTCACCGGCAAGACCAAC 1556 Query 230593 TTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATGA 230638 |||||||| ||| ||| || || |||| | | || || |||| Sbjct 1557 TTCTTCGAGAAGAAGGTCGCCGAGTACCAGAAGGCCGGCGTCATGA 1602 >seq866 Length=6634 Score = 131 bits (144), Expect = 4e-25 Identities = 263/385 (68%), Gaps = 9/385 (2%) Strand=Plus/Plus Query 230260 GGTGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGTCTCCAT 230319 || |||||||| |||||| | |||||| ||||| ||||||||||| || || Sbjct 20 GGCGTGATGCCCGGCCTCACCTTCAGCAACGAGCTCATCTCGCGCGACGAGGGCCTGCA- 78 Query 230320 CAAC-AGTTCGGCGAGCTTATGTATTCAA-AGCTCCA----GAACAAGCTACCATTCGAG 230373 || | | |||| | || |||| ||| |||| || | ||||||| || |||| Sbjct 79 CACCGACTTCGCCTGCCTGCTGTA--CAACAGCTACATCAAGCACAAGCTGCCGCGCGAG 136 Query 230374 ACGGTCAAACAAATCATTACAGAAGCAGTTGAAAACGAAAAGGAGTTCATTTGTGACGCT 230433 || | ||||| || || || || | | ||| ||||||||||| || ||||| Sbjct 137 CGCGTGCTGGACATCATCACCGACGCCGTCGTCATCGAGAAGGAGTTCATCTGCGACGCG 196 Query 230434 ATTCCATGTCGCCTTATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTA 230493 | || ||||| || ||||||||||| || || ||| | ||||||||||| ||||| Sbjct 197 CTGCCCGTGCGCCTCATCGGCATGAACGCCGACCTCATGAGCCAGTACATCGAGTTCGTC 256 Query 230494 GCCGACCGCATTTTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTT 230553 || |||||| | | || | || || ||||| |||||||| | |||||||| Sbjct 257 GCGGACCGCCTGCTCGTGTCGCTGGGCCTGGAGAAGCACTACAACTCCACCAACCCCTTC 316 Query 230554 GCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGT 230613 | || |||||| | || || || || ||||||||||||||||| ||| ||| Sbjct 317 GACTTCATGGAGATGATCTCCCTCACCGGCAAGACCAACTTCTTCGAGAAGAAGGTCGCC 376 Query 230614 GACTATCAGAGGCCTGGTGTGATGA 230638 || || |||| | | || || |||| Sbjct 377 GAGTACCAGAAGGCCGGCGTCATGA 401 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057783312783260