Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20culicis_20[genbank_20GCA_5F000482145.1_202013-10-25] 3,002 sequences; 23,587,153 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq1609 448 5e-121 seq866 179 4e-40 seq36 161 1e-34 seq257 156 4e-33 seq2803 136 4e-27 seq782 131 2e-25 seq455 131 2e-25 seq1188 109 6e-19 >seq1609 Length=2085 Score = 448 bits (496), Expect = 5e-121 Identities = 622/863 (72%), Gaps = 16/863 (2%) Strand=Plus/Plus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 |||||||||| || ||||||||| ||| | |||| | |||||||| || | || ||| Sbjct 684 GAGCCGCTGCAGCAGGAGAACCCCTACCGCTACGTGCTCTTCCCCATCCAGTTCCACGAC 743 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || ||||||| |||||| || ||| | ||||||| | |||||| | ||||| Sbjct 744 ATCTGGCGCAAGTACAAGGAGCAGGAGAGCTGCATCTGGACGCTGGAGGAGATCGACCTC 803 Query 116696 TCCAAGGACACGAGCGACTGGG---AGCGCTTGAACGACAACGAGCGCCATTTCATCAAG 116752 || ||| |||||||| ||| ||| ||| ||||| || ||||||||| Sbjct 804 GGCAGCGACCTCGCCGACTGGGTCAAGC---TGAGCGAGGGCGAGCAGCACTTCATCAAG 860 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 |||||||||||||| ||||||| |||||||||||||||| |||||| || | | ||| Sbjct 861 CACGTGCTGGCCTTCTTCGCCGGCAGCGACGGCATCGTCGTCGAGAACCTCGCGGTGCGC 920 Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872 ||| || || ||||| |||||||||| |||||||||||| ||| || ||| Sbjct 921 TTCATGTCCGACGTCAAGGTGCCCGAGGCGCGCGCCTTCTACGGCTTCCAGCTCATGATG 980 Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT-GCGCTCTTCGGA 116931 |||||| | ||||| || | ||| ||| || ||||||| ||| | || | | | Sbjct 981 GAGAACATCCACTCCGAGACGTACTCGGTGCTGCTCGACACCTACATCACGGACAGC-GC 1039 Query 116932 GGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGA 116991 ||||||||| || || || |||||||| |||| || || ||| || | |||||||| | Sbjct 1040 GGAGAAGCTGCGCCTGCTGCACGCCATCCAGACCATCCCCTGCATCCAGAAGAAGGCCAA 1099 Query 116992 GTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTT 117051 ||||| |||||||||| |||||| | ||| |||| ||||| || | | ||| Sbjct 1100 CTGGGCCGTGCGCTGGAT---CGGCAGCGCCGCCAGCTTCCAGGAGCGGCTCATCGGCTT 1156 Query 117052 CGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAA 117111 |||||||||||||||| ||||||| || ||| ||| | |||| || ||||||||||| Sbjct 1157 CGCGGCCGTCGAGGGCATCTTCTTCTCCGGCTCCTTCTGCTCCATCTTCTGGCTCAAGAA 1216 Query 117112 ACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCT 117171 |||||| | ||||||||||| || |||||||||||||||||||| | |||||||| || Sbjct 1217 GCGCGGCGTGATGCCCGGCCTCACCTTCAGCAACGAGCTCATCTCGCGCGACGAGGGCCT 1276 Query 117172 GCATTGCGACTTTGCCTGTTTGCTGTTCAA---GCATTTGGTGCAGCGACCGAGCGCG-G 117227 ||| |||||| ||||| |||||| ||| || | || | | | |||| | Sbjct 1277 GCACACCGACTTCGCCTGCCTGCTGTACAACAGCCACATCAAACA-CAAGCTGCCGCGCG 1335 Query 117228 CGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAG 117287 |||||| ||| ||| |||||||||| |||| ||||||| || ||| || ||| | Sbjct 1336 AGCGCGTGCTGGACATCATCACCGACGCCGTCGTCATCGAGAAGGAGTTCATCTGCGACG 1395 Query 117288 CGCTGCCGGTGCGTCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTCG 117347 ||||||| ||||| || | || | || ||| ||| || ||||||||||||| Sbjct 1396 CGCTGCCCGTGCGCCTCATCGGCATGAACGCCGACCTCATGAGCCAGTACATCGAGTTCG 1455 Query 117348 TCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCCGC 117407 |||| ||| | ||||| | ||||| | | |||||||||||| | ||||||| Sbjct 1456 TCGCGGACCGCCTGCTCGTGTCGCTGGGCCTGGAGAAGCACTACAACTCCACCAACCCCT 1515 Query 117408 TGGACTTTATGAACCTCATCTCC 117430 | ||||| ||| | | |||||| Sbjct 1516 TCGACTTCATGGAGATGATCTCC 1538 >seq866 Length=6634 Score = 179 bits (198), Expect = 4e-40 Identities = 245/337 (73%), Gaps = 5/337 (1%) Strand=Plus/Plus Query 117098 TTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCC 117157 || ||||||||||| |||||| | ||||||||||| || |||||||||||||||||||| Sbjct 2 TTCTGGCTCAAGAAGCGCGGCGTGATGCCCGGCCTCACCTTCAGCAACGAGCTCATCTCG 61 Query 117158 AGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCA--AGC-ATTTGGTGCAG 117214 | |||||||| ||||| |||||| ||||| |||||| || ||| | | ||| Sbjct 62 CGCGACGAGGGCCTGCACACCGACTTCGCCTGCCTGCTGTACAACAGCTACATCAAGCA- 120 Query 117215 CGACCGAGCGCG-GCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCG 117273 | | | |||| | |||||| ||| ||| |||||||||| |||| ||||||| || Sbjct 121 CAAGCTGCCGCGCGAGCGCGTGCTGGACATCATCACCGACGCCGTCGTCATCGAGAAGGA 180 Query 117274 CTTCCTCACCGAAGCGCTGCCGGTGCGTCTGCTGGGACTCAATTGCGAAACGATGTCGCA 117333 ||| || ||| |||||||| ||||| || | || | || ||| ||| || Sbjct 181 GTTCATCTGCGACGCGCTGCCCGTGCGCCTCATCGGCATGAACGCCGACCTCATGAGCCA 240 Query 117334 ATACATCGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAA 117393 ||||||||||||||||| ||| | ||||| | ||||| | | ||||||||||| Sbjct 241 GTACATCGAGTTCGTCGCGGACCGCCTGCTCGTGTCGCTGGGCCTGGAGAAGCACTACAA 300 Query 117394 CACGCCCAACCCGCTGGACTTTATGAACCTCATCTCC 117430 | | ||||||| | ||||| ||| | | |||||| Sbjct 301 CTCCACCAACCCCTTCGACTTCATGGAGATGATCTCC 337 >seq36 Length=60674 Score = 161 bits (178), Expect = 1e-34 Identities = 174/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || ||||| || ||| || |||| ||||| || | | Sbjct 7038 ATGCAGATCTTCGTGAAGACTCTGACCGGCAAGACGATCGCCCTCGAGGTCGAGGCGAGC 7097 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | |||| || || | ||||| ||||||||||| ||||||| Sbjct 7098 GACACCATCGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCA 7156 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||||| ||| ||||| ||||| || || | ||||| ||| |||||||| Sbjct 7157 GCAGCGCCTCATCTTCGCTGGCAAGCAGCTCGAGGAGGGCCGCACGCTCGCGGACTACAA 7216 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||| ||||||||| |||||||||| || ||| ||||| | | ||||| Sbjct 7217 CATTCAGAAGGAGTCCACGCTGCACCTCGTGCTGCGCCTCCGCGGCGG 7264 >seq257 Length=25438 Score = 156 bits (172), Expect = 4e-33 Identities = 173/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || ||||| || ||||| || ||| || | || || || || | | Sbjct 22456 ATGCAAATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCCCTGGAGGTGGAGGCGAGC 22397 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | |||| || || | ||||| ||||||||||| ||||||| Sbjct 22396 GACACGATCGAGAACG-TGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCA 22338 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| || ||||| ||||| || || | ||||| ||| |||||||| Sbjct 22337 GCAGCGCCTGATCTTTGCTGGCAAGCAGCTCGAGGAGGGCCGCACGCTCGCGGACTACAA 22278 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||| |||||||||| || ||| ||||| || | ||||| Sbjct 22277 CATCCAGAAGGAGTCCACGCTGCACCTGGTGCTGCGCCTGCGCGGCGG 22230 >seq2803 Length=585 Score = 136 bits (150), Expect = 4e-27 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||||| || ||||| || ||| || | || || || || | | Sbjct 240 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCCCTGGAGGTGGAGGCGAGC 181 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | |||| || || | ||||| ||||||||||| ||||||| Sbjct 180 GACACGATCGAGAACG-TGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCA 122 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| || || || |||||||| || | || || ||| |||||||| Sbjct 121 GCAGCGCCTGATCTTTGCTGGTAAGCAGCTGGAGGAGGGCCGTACGCTCGCGGACTACAA 62 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||| | |||||||| || ||| | || || | |||||| Sbjct 61 CATCCAGAAGGAGTCGACGCTGCACCTGGTGCTCCGTCTGCGCGGCGGC 13 Score = 136 bits (150), Expect = 4e-27 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||||| || ||||| || ||| || | || || || || | | Sbjct 468 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCCCTGGAGGTGGAGGCGAGC 409 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | |||| || || | ||||| ||||||||||| ||||||| Sbjct 408 GACACGATCGAGAACG-TGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCA 350 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| || || || |||||||| || | || || ||| |||||||| Sbjct 349 GCAGCGCCTGATCTTTGCTGGTAAGCAGCTGGAGGAGGGCCGTACGCTCGCGGACTACAA 290 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||| | |||||||| || ||| | || || | |||||| Sbjct 289 CATCCAGAAGGAGTCGACGCTGCACCTGGTGCTCCGTCTGCGCGGCGGC 241 Score = 87.8 bits (96), Expect = 2e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 40802 CGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACG 40861 |||||||||| || || |||| || || || |||||||| || | || || ||| | Sbjct 584 CGGACCAGCAGCGCCTGATCTTTGCTGGTAAGCAGCTGGAGGAGGGCCGTACGCTCGCGG 525 Query 40862 ACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||||||||||| | |||||||| || ||| | || || | |||||| Sbjct 524 ACTACAACATCCAGAAGGAGTCGACGCTGCACCTGGTGCTCCGTCTGCGCGGCGGC 469 >seq782 Length=7656 Score = 131 bits (144), Expect = 2e-25 Identities = 157/211 (74%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||||| || ||||| || ||| || | || || || || | | Sbjct 7637 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCCCTGGAGGTGGAGGCGAGC 7578 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | |||| || || | ||||| ||||||||||| ||||||| Sbjct 7577 GACACGATCGAGAACG-TGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCA 7519 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| || || || |||||||| || | || || ||| |||||||| Sbjct 7518 GCAGCGCCTGATCTTTGCTGGTAAGCAGCTGGAGGAGGGCCGTACGCTCGCGGACTACAA 7459 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 ||||||||||||| | |||||||| || ||| Sbjct 7458 CATCCAGAAGGAGTCGACGCTGCACCTGGTG 7428 >seq455 Length=15778 Score = 131 bits (144), Expect = 2e-25 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || ||||| || ||||| || ||| || | || || || || | | Sbjct 237 ATGCAGATCTTTGTGAAGACGCTGACCGGCAAGACGATCGCCCTGGAGGTGGAGGCGAGC 178 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | |||| || || | ||||| ||||||||||| ||||||| Sbjct 177 GACACGATCGAGAACG-TGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCA 119 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| || || || |||||||| || | || || ||| |||||||| Sbjct 118 GCAGCGCCTGATCTTTGCTGGTAAGCAGCTGGAGGAGGGCCGTACGCTCGCGGACTACAA 59 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||| | |||||||| || ||| | || || | |||||| Sbjct 58 CATCCAGAAGGAGTCGACGCTGCACCTGGTGCTCCGTCTGCGCGGCGGC 10 >seq1188 Length=3738 Score = 109 bits (120), Expect = 6e-19 Identities = 148/205 (72%), Gaps = 6/205 (3%) Strand=Plus/Plus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 |||||||||| || ||||||||| ||| | |||| | |||||||| || | || ||| Sbjct 3537 GAGCCGCTGCAGCAGGAGAACCCCTACCGCTACGTGCTCTTCCCCATCCAGTTCCACGAC 3596 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || ||||||| |||||| || ||| | ||||||| | |||||| | ||||| Sbjct 3597 ATCTGGCGCAAGTACAAGGAGCAGGAGAGCTGCATCTGGACGCTGGAGGAGATCGACCTC 3656 Query 116696 TCCAAGGACACGAGCGACTGGG---AGCGCTTGAACGACAACGAGCGCCATTTCATCAAG 116752 || ||| |||||||| ||| ||| ||| ||||| || ||||||||| Sbjct 3657 GGCAGCGACCTCGCCGACTGGGTCAAGC---TGAGCGAGGGCGAGCAGCACTTCATCAAG 3713 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCA 116777 |||||||||||||| ||||||| || Sbjct 3714 CACGTGCTGGCCTTCTTCGCCGGCA 3738 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515199866399520