Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20culicis_20[genbank_20GCA_5F000482145.1_202013-10-25] 3,002 sequences; 23,587,153 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq36 138 1e-27 seq257 113 4e-20 seq455 107 2e-18 seq782 104 2e-17 seq2803 102 7e-17 seq2 84.2 2e-11 >seq36 Length=60674 Score = 138 bits (152), Expect = 1e-27 Identities = 168/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 ||| ||||| | | || ||| | ||| | || ||||| || ||||||||||| || Sbjct 7265 ACCGCCGCGGAGGCGCAGCACGAGGTGCAGCGTGGACTCCTTCTGAATGTTGTAGTCCGC 7206 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 | ||||| ||||||||||| || |||||| ||||||| |||||||| || || || Sbjct 7205 GAGCGTGCGGCCCTCCTCGAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCCGGCGG 7146 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690 |||||||||||||| || || || || | |||| |||||| | |||||| Sbjct 7145 GATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTCGCCTCGAC 7086 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||||| || | ||| |||||||||||||| || || || ||||||||| Sbjct 7085 CTCGAGGGCGATCGTCTTGCCGGTCAGAGTCTTCACGAAGATCTGCATG 7037 >seq257 Length=25438 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 ||| ||||| | | || ||||| ||| | || ||||| || || |||||||| || Sbjct 22229 ACCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGC 22288 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 | ||||| ||||||||||| || ||||| |||| || |||||||| || ||||| Sbjct 22289 GAGCGTGCGGCCCTCCTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGAGG 22348 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690 |||||||||||||| || || || || | |||| ||||| | ||| || Sbjct 22349 GATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCAC 22408 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGG 118740 ||| | || | ||| ||||||||||| || || || || || ||||||| Sbjct 22409 CTCCAGGGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATTTGCATGG 22458 >seq455 Length=15778 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| ||| | || ||||| || || |||||||| || | || || ||||| Sbjct 28 CACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTACGGCCCTCCTC 87 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| || ||||| |||| || |||||||| || ||||| |||||||||||||| Sbjct 88 CAGCTGCTTACCAGCAAAGATCAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTG 147 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || | |||| ||||| | ||| ||||| | || | ||| || Sbjct 148 GATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCACCTCCAGGGCGATCGTCTT 207 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATGG 118740 ||||||||| || || ||||| |||||||||| Sbjct 208 GCCGGTCAGCGTCTTCACAAAGATCTGCATGG 239 >seq782 Length=7656 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| ||||| | | | ||||| ||| | || ||||| || || |||||||| || Sbjct 7409 TACCACCGCGCAGACGGAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCG 7468 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | || || ||||| ||||| || ||||| |||| || |||||||| || |||| Sbjct 7469 CGAGCGTACGGCCCTCCTCCAGCTGCTTACCAGCAAAGATCAGGCGCTGCTGGTCCGGAG 7528 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | |||||||||||||| || || || || | |||| ||||| | ||| | Sbjct 7529 GGATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCA 7588 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 |||| | || | ||| ||||||||||| || || || || ||||||||| Sbjct 7589 CCTCCAGGGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATG 7638 >seq2803 Length=585 Score = 102 bits (112), Expect = 7e-17 Identities = 149/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| ||| | || ||||| || || |||||||| || | || || ||||| Sbjct 31 CACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTACGGCCCTCCTC 90 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| || ||||| |||| || |||||||| || ||||| |||||||||||||| Sbjct 91 CAGCTGCTTACCAGCAAAGATCAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTG 150 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || | |||| ||||| | ||| ||||| | || | ||| || Sbjct 151 GATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCACCTCCAGGGCGATCGTCTT 210 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||||||||| || || || || ||||||||| Sbjct 211 GCCGGTCAGCGTCTTCACGAAGATCTGCATG 241 Score = 102 bits (112), Expect = 7e-17 Identities = 149/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| ||| | || ||||| || || |||||||| || | || || ||||| Sbjct 259 CACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTACGGCCCTCCTC 318 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| || ||||| |||| || |||||||| || ||||| |||||||||||||| Sbjct 319 CAGCTGCTTACCAGCAAAGATCAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTG 378 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || | |||| ||||| | ||| ||||| | || | ||| || Sbjct 379 GATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCACCTCCAGGGCGATCGTCTT 438 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||||||||| || || || || ||||||||| Sbjct 439 GCCGGTCAGCGTCTTCACGAAGATCTGCATG 469 >seq2 Length=121565 Score = 84.2 bits (92), Expect = 2e-11 Identities = 162/239 (68%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 134394 ATCAACGCGGACTCGTGTAGAGTCTTGTAAATGCCATCGACGCTGTCGTCCTTGATGCTT 134453 |||| ||| |||| | || || | ||| ||||| |||| |||||||||||| || Sbjct 26398 ATCACGGCGCACTCCTTCAGCGTGTCGTAGATGCCCTCGATGCTGTCGTCCTTCATCGCG 26457 Query 134454 TGCAGGAAACACGAACACATTTGTTGACGACGCGTACCCGCCGAAAACAGAGTCGGGCTC 134513 |||||| ||||| | ||| || | | ||||| || || || || ||| | Sbjct 26458 ACCAGGAAGCACGAGCTCATCTGCGGCTTGGGGGTACCGGCGTTGAAGAGCGTGGGGGTG 26517 Query 134514 GCGTGCGTAAAGGTGCCCAGACTCATCAACTGATATGTTTCAATGACGCTCTTAACGTCG 134573 |||||||| ||| |||| | ||| | | ||||| | ||||| || | ||| Sbjct 26518 GCGTGCGTGAAGAAGCCCTGCGACATGAGCATGTATGTGTTGCGGACGCGCTCCAGGTCC 26577 Query 134574 TCGCCGTGAATGGCCAGAGCGACGCGCATGAGCATGTGTTGGGGTCTCTCCATGATCAC 134632 | |||||| ||| | | || ||||||| || |||||| || || | ||||| |||||| Sbjct 26578 TTGCCGTGGATGCCAATCGCCACGCGCAGGATCATGTGCTGCGGACGCTCCACGATCAC 26636 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433814527501384