Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20culicis_20[genbank_20GCA_5F000482145.1_202013-10-25] 3,002 sequences; 23,587,153 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq455 125 5e-24 seq36 125 5e-24 seq2803 122 6e-23 seq782 116 2e-21 seq257 116 2e-21 >seq455 Length=15778 Score = 125 bits (138), Expect = 5e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||||||||| | ||||||||||| | || || ||||| ||||||||||| | Sbjct 11 CCGCCGCGCAGACGGAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCG 70 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 ||| |||| | || |||| |||||| || || || || || ||||||||||| || Sbjct 71 AGCGTACGGCCCTCCTCCAGCTGCTTACCAGCAAAGATCAGGCGCTGCTGGTCCGGAGGG 130 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||| ||| | | | |||| ||| ||| || || Sbjct 131 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCACC 190 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| | ||| || |||||||| || || ||||||||||||||||| Sbjct 191 TCCAGGGCGATCGTCTTGCCGGTCAGCGTCTTCACAAAGATCTGCAT 237 >seq36 Length=60674 Score = 125 bits (138), Expect = 5e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 |||||||| || | |||||| ||||| | || || ||||| ||||||||||| | Sbjct 7264 CCGCCGCGGAGGCGCAGCACGAGGTGCAGCGTGGACTCCTTCTGAATGTTGTAGTCCGCG 7205 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGT-CGACGGG 34281 ||| ||| | || || | ||||||||| ||||| ||||| |||||||||| || |||| Sbjct 7204 AGCGTGCGGCCCTCCTCGAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCCGGCGGG 7145 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || ||||||||| ||||| ||| | | | || | ||| ||| ||||| Sbjct 7144 -ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTCGCCTCGAC 7086 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | | ||| || |||||||| ||||| ||||| ||||||||||| Sbjct 7085 CTCGAGGGCGATCGTCTTGCCGGTCAGAGTCTTCACGAAGATCTGCAT 7038 >seq2803 Length=585 Score = 122 bits (134), Expect = 6e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||||||||| | ||||||||||| | || || ||||| ||||||||||| | Sbjct 14 CCGCCGCGCAGACGGAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCG 73 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 ||| |||| | || |||| |||||| || || || || || ||||||||||| || Sbjct 74 AGCGTACGGCCCTCCTCCAGCTGCTTACCAGCAAAGATCAGGCGCTGCTGGTCCGGAGGG 133 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||| ||| | | | |||| ||| ||| || || Sbjct 134 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCACC 193 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| | ||| || |||||||| || || ||||| ||||||||||| Sbjct 194 TCCAGGGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 240 Score = 122 bits (134), Expect = 6e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||||||||| | ||||||||||| | || || ||||| ||||||||||| | Sbjct 242 CCGCCGCGCAGACGGAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCG 301 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 ||| |||| | || |||| |||||| || || || || || ||||||||||| || Sbjct 302 AGCGTACGGCCCTCCTCCAGCTGCTTACCAGCAAAGATCAGGCGCTGCTGGTCCGGAGGG 361 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||| ||| | | | |||| ||| ||| || || Sbjct 362 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCACC 421 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| | ||| || |||||||| || || ||||| ||||||||||| Sbjct 422 TCCAGGGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 468 Score = 82.4 bits (90), Expect = 5e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||||||||| | ||||||||||| | || || ||||| ||||||||||| | Sbjct 470 CCGCCGCGCAGACGGAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCG 529 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC 34275 ||| |||| | || |||| |||||| || || || || || ||||||||||| Sbjct 530 AGCGTACGGCCCTCCTCCAGCTGCTTACCAGCAAAGATCAGGCGCTGCTGGTC 582 >seq782 Length=7656 Score = 116 bits (128), Expect = 2e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || |||||||| | ||||||||||| | || || ||||| ||||||||||| | Sbjct 7411 CCACCGCGCAGACGGAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCG 7470 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 ||| |||| | || |||| |||||| || || || || || ||||||||||| || Sbjct 7471 AGCGTACGGCCCTCCTCCAGCTGCTTACCAGCAAAGATCAGGCGCTGCTGGTCCGGAGGG 7530 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||| ||| | | | |||| ||| ||| || || Sbjct 7531 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCACC 7590 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| | ||| || |||||||| || || ||||| ||||||||||| Sbjct 7591 TCCAGGGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 7637 >seq257 Length=25438 Score = 116 bits (128), Expect = 2e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||||||||| | |||||||||||| | || || ||||| ||||||||||| | Sbjct 22230 CCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCG 22289 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 ||| ||| | || || | ||||||||| || || || || ||||||||||| || Sbjct 22290 AGCGTGCGGCCCTCCTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGAGGG 22349 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||| ||| | | | |||| ||| ||| || || Sbjct 22350 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCACC 22409 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| | ||| || |||||||| || || ||||| ||||| ||||| Sbjct 22410 TCCAGGGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATTTGCAT 22456 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323060179805120