Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20culicis_20[genbank_20GCA_5F000482145.1_202013-10-25] 3,002 sequences; 23,587,153 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq2 159 7e-34 seq1609 104 5e-17 seq866 98.7 2e-15 >seq2 Length=121565 Score = 159 bits (176), Expect = 7e-34 Identities = 563/864 (65%), Gaps = 24/864 (3%) Strand=Plus/Minus Query 248877 GATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGA 248936 ||||||||| || ||||||||| | |||| ||||| | || || ||| | || Sbjct 26634 GATCGTGGAGCGTCCGCAGCACATGATCCTGCGCGTGGCGATTGGCATCCACGGCAAGGA 26575 Query 248937 CATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGTGAACGCTGGATGACACATGCCAC 248996 | | ||| |||| | | | || |||| ||| | ||| | || || ||||| Sbjct 26574 CCTGGAGCGCGTCCGCAACACATACATGCTCATGTCGCAGGGCTTCTTCACGCACGCCAC 26515 Query 248997 ACCGACGCTCTTCAACGCCGGTACCGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGC 249056 || ||||||||||||||||||||| ||| ||| ||||||||||||| || | || Sbjct 26514 CCCCACGCTCTTCAACGCCGGTACCCCCAAGCCGCAGATGAGCTCGTGCTTCCTGGTCGC 26455 Query 249057 CATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTTAAACAGACGGCGAAGATTTC 249116 ||| | |||||| |||| ||||| || |||||||| || || || ||| Sbjct 26454 GATGAAGGACGACAGCATCGAGGGCATCTACGACACGCTGAAGGAGTGCGCCGTGATCAG 26395 Query 249117 TAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGTACAT 249176 || || ||||| || || || || ||||||||| ||| || ||||| Sbjct 26394 CAAGGCGGCTGGCGGCATTGGCATCCATATCCACAACATCCGCGCGGCCGGCAGCTACAT 26335 Query 249177 CAAAGGTACAAATGGG--GTCAGTGATGGTATCGTACCCCTCCTTCGATGCTTTGAGTCC 249234 | || || || || ||| | || || | || | | || | | | Sbjct 26334 CGCGGGCACCAACGGCACGTCGA--ACGGCCTCATGCCGATGATCCGCGTGTGGAACAAC 26277 Query 249235 ACCGCCAGGTTCATCAACCAGGCCGGGCGC---CGAAAGGGGTCGTTCGCCATGTATTTG 249291 || ||| | | | | | |||| ||| | || ||||| | ||||||||||| | Sbjct 26276 ACGGCCCGCTACGTTGATCAGGGCGGCGGTAAGCGCAAGGGCGCCTTCGCCATGTACCTC 26217 Query 249292 GAAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGAACAACGGCAACGAG 249351 || |||||||||||| || || ||||||||| | |||| |||| ||||| ||| Sbjct 26216 GAGCCGTGGCACGCCGACATCTTCGAGTTCCTGCTCATGAAGCGCAACACTGGCAAGGAG 26157 Query 249352 CTCATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGACTTGTTCATGCGCCGC 249411 | | | ||||| ||||||||||||| || ||| || | ||| | |||||| ||| Sbjct 26156 GACCAGCGCGCGCGCGACCTCTTCTACGCGCTCTGGATCCCGGACCTCTTCATGAAGCGC 26097 Query 249412 GTCAAGGCCGACGGCGATTGGACGCTTCT-TTCTCCGTC-CGACGCCCCGGACCTCATCG 249469 || ||| || ||| | |||||||| | | || | |||||||| | ||||| || Sbjct 26096 GTGAAGAGTGAGGGCAAGTGGACGCTCATGGACCCCAACACGACGCCC--GGCCTCAGCG 26039 Query 249470 ATCTACACGGCGCCGACTTCGACCAAGC-CTATAAGAAATACGAATCCAACGGCATCGGC 249528 | ||||||| || ||||| |||| ||| || |||||| | || || || ||| Sbjct 26038 ACTGCCACGGCGAGGAGTTCGA-GAAGCTCTACGAGGGGTACGAAGCGAAGGGTATGGGC 25980 Query 249529 A---AGACAATCAAGGCTC-GGACCCTT--TTTGCGAAGGTGGTGGAGTCCCAGATAGAG 249582 | || || |||| | ||| | | ||||| | | ||||||| ||||| || Sbjct 25979 ATCCGCACCGTCCAGGCGCAGGAGCTGTGGTTTGCCA---TTCTGGAGTCTCAGATCGAA 25923 Query 249583 ACAGGGGGGCCGTATTAT-TTGTTCAAAGACGCGTGCAACGCCAAGAGTAACCAACGGCA 249641 || || | ||||| | || | | ||| || || |||||||||||| ||||| | | | Sbjct 25922 ACGGGCGTGCCGT-TCATGCTCTACAAGGATGCCTGCAACGCCAAGTCGAACCAGCAGAA 25864 Query 249642 TCTTGGTACCATCCGCTCGTCAAATCTCTGTGCAGAGGTGATTCAATACTCGTCCAAGGA 249701 || || |||||| | || || || || | ||| | || | ||| | || ||||| Sbjct 25863 CCTCGGCACCATCAAGTGCTCTAACCTGTGCACGGAGATCATCGAGTACACCTCGAAGGA 25804 Query 249702 GGAGATTGCCGTCTGCAACCTGGC 249725 |||| || || ||||||||||| Sbjct 25803 CGAGACGGCGGTGTGCAACCTGGC 25780 >seq1609 Length=2085 Score = 104 bits (114), Expect = 5e-17 Identities = 403/620 (65%), Gaps = 20/620 (3%) Strand=Plus/Minus Query 157244 ACCCCGGGCTTGCTGTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGA 157303 || |||| ||| ||||||||| || | ||||| || ||||||||||| || ||| Sbjct 1597 ACGCCGGCCTTCTGGTACTCGGCGACCTTCTTCTCGAAGAAGTTGGTCTTGCCGGTGAGG 1538 Query 157304 GAAATCATGTCCATCCACTCGAATGGGTTGGCGCAGTTGTACACCTTGTCGTACCCCAGC 157363 || ||||| ||||| | ||||| ||||||| | ||||||| ||| || |||||| Sbjct 1537 GAGATCATCTCCATGAAGTCGAAGGGGTTGGTGGAGTTGTAGTGCTTCTCCAGGCCCAGC 1478 Query 157364 TGGTTCAGCCAGTAGTCCGCCACAAACTTGATGTACTCTGTCATGCTCTTCTCGCTGATA 157423 ||| | |||||| || |||| |||||||| ||||| | || | || Sbjct 1477 GACACGAGCAGGCGGTCCGCGACGAACTCGATGTACTGGCTCATGAGGTCGGCGTTCATG 1418 Query 157424 CCGATGA-GCGCGACGGGAAGCGCCGACG-AAATGAATTCGCACTCAACGCTAACAGCGT 157481 ||||||| |||| ||||| |||| || || | ||||| || ||| | | || |||| Sbjct 1417 CCGATGAGGCGC-ACGGGCAGCG-CGTCGCAGATGAACTCCTTCTCGATGACGACGGCGT 1360 Query 157482 GCTTGAAAATTTCATGAACTCTCTCCCGCGGCAGCCTATTCTTGAGATGCTTGTAGATGA 157541 ||| || || | || | ||| ||||||||| | | |||| || ||| | | Sbjct 1359 CGGTGATGATGTCCAGCACGCGCTCGCGCGGCAGCTTGTGTTTGATGTGGCTGTTGTACA 1300 Query 157542 GAACGGAAGC--CGT-GGCGTGAAGTCCTTCGTCTCTGGCGATGAGAGAGTTCGCGAACG 157598 | | | | || || || ||| || || ||||| | | |||||| ||| ||| | Sbjct 1299 GCAGGCAGGCGAAGTCGGTGTGCAGGCCCTCGTCGCGCGAGATGAGCTCGTTGCTGAAGG 1240 Query 157599 ACAAACCCTTGAACTTC-TGC--CGCTTCTTCAGCCAGTAGATGGCGCAGAACGACCCAC 157655 | || | | || || |||||||| |||||| |||||| |||||| || || Sbjct 1239 TGAGGCC---GGGCATCACGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAGCCGG 1183 Query 157656 TGAACTGCACGCCCTCCAGACAG--GTGAAGCCGACTAGCCTCTCCGCGAGTGAAGCGGT 157713 ||| | |||||| ||| | | |||||||| |||| |||| || |||| Sbjct 1182 AGAAGAAGATGCCCTC--GACGGCCGCGAAGCCGATGAGCCGCTCCTGGAAGCTGGCGG- 1126 Query 157714 TTCGGGGTTCATCCACTTCTCTGCCCAGAGCGCCTTCTTTTCGATGATTGGCATCGTCTG 157773 || | ||||| | | |||||| |||||||| | |||| || || ||||| Sbjct 1125 --CGCTGCCGATCCAGCGCACGGCCCAGTTGGCCTTCTTCTGGATGCAGGGGATGGTCTG 1068 Query 157774 GATAGATCGCATGACGTGTCTCTGCTCTTCCGTGTCCCTGAAGTAAGTCTGAATAAGCAG 157833 ||| | ||| | | | || ||| | ||||| ||| ||| || | | |||| Sbjct 1067 GATGGCGTGCAGCAGGCGCAGCTTCTCCGCGCTGTCCGTGATGTAGGTGTCGAGCAGCAC 1008 Query 157834 AGAGTACGATTCGCCGTGGA 157853 ||||||| ||| ||||| Sbjct 1007 CGAGTACGTCTCGGAGTGGA 988 >seq866 Length=6634 Score = 98.7 bits (108), Expect = 2e-15 Identities = 196/285 (69%), Gaps = 4/285 (1%) Strand=Plus/Minus Query 157244 ACCCCGGGCTTGCTGTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGA 157303 || |||| ||| ||||||||| || | ||||| || ||||||||||| || ||| Sbjct 396 ACGCCGGCCTTCTGGTACTCGGCGACCTTCTTCTCGAAGAAGTTGGTCTTGCCGGTGAGG 337 Query 157304 GAAATCATGTCCATCCACTCGAATGGGTTGGCGCAGTTGTACACCTTGTCGTACCCCAGC 157363 || ||||| ||||| | ||||| ||||||| | ||||||| ||| || |||||| Sbjct 336 GAGATCATCTCCATGAAGTCGAAGGGGTTGGTGGAGTTGTAGTGCTTCTCCAGGCCCAGC 277 Query 157364 TGGTTCAGCCAGTAGTCCGCCACAAACTTGATGTACTCTGTCATGCTCTTCTCGCTGATA 157423 ||| | |||||| || |||| |||||||| ||||| | || | || Sbjct 276 GACACGAGCAGGCGGTCCGCGACGAACTCGATGTACTGGCTCATGAGGTCGGCGTTCATG 217 Query 157424 CCGATGA-GCGCGACGGGAAGCGCCGACG-AAATGAATTCGCACTCAACGCTAACAGCGT 157481 ||||||| |||| ||||| |||| || || | ||||| || ||| | | || |||| Sbjct 216 CCGATGAGGCGC-ACGGGCAGCG-CGTCGCAGATGAACTCCTTCTCGATGACGACGGCGT 159 Query 157482 GCTTGAAAATTTCATGAACTCTCTCCCGCGGCAGCCTATTCTTGA 157526 ||| || || | || | ||| ||||||||| | | ||||| Sbjct 158 CGGTGATGATGTCCAGCACGCGCTCGCGCGGCAGCTTGTGCTTGA 114 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073725099588736