Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20culicis_20[genbank_20GCA_5F000482145.1_202013-10-25] 3,002 sequences; 23,587,153 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq518 129 5e-25 >seq518 Length=13848 Score = 129 bits (142), Expect = 5e-25 Identities = 288/429 (67%), Gaps = 14/429 (3%) Strand=Plus/Plus Query 20913 AGCTGAAGCAGCAGGGGATCAACGTGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGC 20972 ||||| || |||| | || |||||||| ||||| ||||| ||||| |||| ||||| Sbjct 5416 AGCTGCTGCTGCAGCGCGTCCACGTGGTTCTTGTACACGTGCGCGTCGCCCAGCGTGTGG 5475 Query 20973 ACAAAGTCTCCCGGGGTCAGGCCCGTGACGTGAGCGATCAG-ATACGTCAGGAGGGCGTA 21031 | | || || || |||| ||||| | | ||||| || ||| ||||||| |||||| Sbjct 5476 ATGAGCTCCCCGGGCTTCAGCCCCGTCGCCTTGGCGATGAGGATA-GTCAGGAAGGCGTA 5534 Query 21032 GCTGGCGATGTTAAACGGGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCA 21091 ||||||||| || || || ||||||||||||||| | | |||||||||| ||| Sbjct 5535 CGAGGCGATGTTGAAGGGCACACCGAGGCCCATGTCGCAGCTGCGCTGGTACAGCATGCA 5594 Query 21092 GGACAGCTCCCCC------CGAGCCACGTAAAACTGACACAAAACGTGACAAGGAGGGAG 21145 | ||||||| | | |||||| ||||| | | | ||| || || || || Sbjct 5595 GCTCAGCTCCTGCGTGTTGGGGTTCACGTAGAACTGGCCGAGGAGGTGGCACGGCGGCAG 5654 Query 21146 AGCCATCCGCGCGAGGTCCGCGGGGTTCCACGCGCACATAACGATGCGCCGATCGTGGGG 21205 |||||| | || | || ||||||||||| | | | || || ||| ||| Sbjct 5655 CGCCATCTTGTCAAGCGCGGCCGGGTTCCACGCCGTGAAGAGCAGCCGGCGGTCGCTGGG 5714 Query 21206 CCGCCTGTTAATTAGATCCACCACGTAACGC---AGCTGGTCCACCCCCTGACCCTCGTA 21262 | | | | || | | ||| ||| | |||||| || |||| || ||||| Sbjct 5715 ATTCGTCT---TGAGCGTCTCGACGATGCGCTTGATCTGGTCGACGCCCTTGCCGTCGTA 5771 Query 21263 GTTGGCGTCGGCCCCCCTGTACTCCGCCCCAAAATGTCTCCACTGGAACCCGTACACCGG 21322 |||| ||| | | |||| || || || || || | ||||||||| ||||| || || Sbjct 5772 GTTGTCGTTGAAGGACGTGTAGTCGGCGCCGAAGTGGCGCCACTGGAAGCCGTAGACGGG 5831 Query 21323 CCCCAGATC 21331 |||||| || Sbjct 5832 CCCCAGGTC 5840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427760349012960