Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20culicis_20[genbank_20GCA_5F000482145.1_202013-10-25] 3,002 sequences; 23,587,153 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq1609 141 1e-28 seq2 134 2e-26 >seq1609 Length=2085 Score = 141 bits (156), Expect = 1e-28 Identities = 298/440 (68%), Gaps = 16/440 (4%) Strand=Plus/Plus Query 125436 TTCGCCGCCGTAGAGGGCATCTTCTTTTCGGG-TAGTTTTGCGGCCATCTTTTGGCTCAA 125494 ||||| ||||| |||||||||||||| || || | || ||| ||||||| |||||||| Sbjct 1155 TTCGCGGCCGTCGAGGGCATCTTCTTCTCCGGCTCCTTCTGCT-CCATCTTCTGGCTCAA 1213 Query 125495 GAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGG 125554 ||||||||| | |||||||| || || ||| |||||| | || || || |||||||| Sbjct 1214 GAAGCGCGGCGTGATGCCCGGCCTCACCTTCAGCAACGAGCTCATCTCGCGCGACGAGGG 1273 Query 125555 CCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAG-TGCAGAT 125613 ||| ||| ||||| ||| || |||| || | | | | | || ||| | Sbjct 1274 CCTGCACACCGACTTCGCCTGCCTGCTGTACAACAGCCACATCAAACACAAGCTGCCGCG 1333 Query 125614 CCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTC 125673 | |||| || | |||| | ||||| ||||| || || | ||||| Sbjct 1334 CGAGCG-------CGTGCTGGACATCATCACCGACGCCGTCGTCATCGAGAAGGAGTTCA 1386 Query 125674 TAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACA 125733 | ||| | || || || || | || ||||||||| | | || ||| || |||||| Sbjct 1387 TCTGCGACGCGCTGCCCGTGCGCCTCATCGGCATGAACGCCGACCTCATGAGCCAGTACA 1446 Query 125734 TAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGCC---GCAAGATTTACAACG 125790 | ||||| || || || || || || || || | | |||| ||| |||||| Sbjct 1447 TCGAGTTCGTCGCGGACCGCCTGCT---CGTGTCGCTGGGCCTGGAGAAGCACTACAACT 1503 Query 125791 CCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCG 125850 ||| || ||||| || |||||| | || || || || ||||||||||| |||| Sbjct 1504 CCACCAACCCCTTCGACTTCATGGAGATGATCTCCCTCACCGGCAAGACCAACTTCTTCG 1563 Query 125851 AGAAGAAGGTCAGCGAGTAC 125870 ||||||||||| ||||||| Sbjct 1564 AGAAGAAGGTCGCCGAGTAC 1583 >seq2 Length=121565 Score = 134 bits (148), Expect = 2e-26 Identities = 352/527 (67%), Gaps = 24/527 (5%) Strand=Plus/Minus Query 96864 CGATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCT 96923 || |||||| ||||||||| ||| || ||||| | ||| | ||| | || || Sbjct 26270 CGCTACGTTGATCAGGGCGGCGGTAAGCGCAAGGGCGCCTTCGCCATGTACCTCGAGCCG 26211 Query 96924 TGGCACGCGGACGTTTTTGACTTTAT---CGAGATGCGCAAAAACTCTGGCTTTGAAGAG 96980 |||||||| ||| | || || || | | || |||||| | ||||| || || Sbjct 26210 TGGCACGCCGACATCTTCGAGTTCCTGCTCATGAAGCGCAACA---CTGGCAAGGAGGAC 26154 Query 96981 GCACGAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTC 97040 || || | ||| | || || || |||||| | || || | |||||||||||||| Sbjct 26153 CAGCGCGCGCGCGACCTCTTCTACGCGCTCTGGATCCCGGACCTCTTCATGAAGCGCGTG 26094 Query 97041 AACGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGC 97100 || | ||| | |||| || ||| |||| || || | ||||| || ||| ||| Sbjct 26093 AAGAGTGAGGGCAAGTGGACGCTCATGGACCCCAACACGACGCCCGGCCTCAGCGACTGC 26034 Query 97101 TGGGGCGAAGAGTTTGAGGCCAAG---TACACGGCCTACGA-GCAAGAGGGCCGATACGT 97156 ||||| ||||| ||| ||| ||| || ||||| || | |||| || | Sbjct 26033 CACGGCGAGGAGTTCGAG---AAGCTCTACGAGGGGTACGAAGCGA-AGGG----TATGG 25982 Query 97157 G-AGACGA---GTCGATGCACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGA 97212 | | || ||| | || | || |||||| ||||| || | ||||| | || | Sbjct 25981 GCATCCGCACCGTCCAGGCGCAGGAGCTGTGGTTTGCCATTCTGGAGTCTCAGATCGAAA 25922 Query 97213 CTGGAACTCCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGC-AACCAACGCCAC 97271 | || |||| ||| |||||||||||| || || | ||| | | ||||| | || Sbjct 25921 CGGGCGTGCCGTTCATGCTCTACAAGGATGCC-TGCAACGCCAAGTCGAACCAGCAGAAC 25863 Query 97272 TTGGGCACCATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGAC 97331 | |||||||||||| |||| || ||||||||||| || | |||||| |||| |||| Sbjct 25862 CTCGGCACCATCAAGTGCTCTAACCTGTGCACGGAGATCATCGAGTACACCTCGAAGGAC 25803 Query 97332 GAGACGGCAGTTTGCGTTCTGGCATCGGTCAATCTGCCCAAGTTTGT 97378 |||||||| || ||| ||||| ||| || ||| |||||||||| Sbjct 25802 GAGACGGCGGTGTGCAACCTGGCCTCGATCGCGCTGTCCAAGTTTGT 25756 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741031391753520