Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20culicis_20[genbank_20GCA_5F000482145.1_202013-10-25] 3,002 sequences; 23,587,153 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq2 237 4e-57 >seq2 Length=121565 Score = 237 bits (262), Expect = 4e-57 Identities = 1131/1764 (64%), Gaps = 75/1764 (4%) Strand=Plus/Minus Query 363434 ATGGTGATATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATT 363493 |||||||| || || || |||||||| ||| | |||| || || ||||| ||||| Sbjct 26639 ATGGTGATCGTG--GAGCGTCCGCAGCACATGATCCTGCGCGTGGCGATTGGCATCCACG 26582 Query 363494 GCCCGGATGTTGATGCCGCGATTGAAACATATAA--GCT----TCTAAGTGCTCGTGTAT 363547 || ||| | || |||| | |||| ||| ||| || || ||| | | Sbjct 26581 GCAAGGACCTGGAG--CGCGTCCGCAACACATACATGCTCATGTCGCAGGGCT----TCT 26528 Query 363548 TCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTT 363607 ||||||||||||| || || | | ||| || || || | || || |||||| || | Sbjct 26527 TCACGCACGCCACCCCCACGCTCTTCAACGCCGGTACCCCCAAGCCGCAGATGAGCTCGT 26468 Query 363608 GCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATT 363667 |||| || | ||||||||||| ||||||||| |||| ||||| || ||| | | Sbjct 26467 GCTTCCTGGTCGCGATGAAGGACGACAGCATCGAGGGCATCTACGACACGCTGAAGGAGT 26408 Query 363668 GTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCAC 363727 | || | || |||| || ||||| ||||| | |||||||| | || || Sbjct 26407 GCGCCGTGATCAGCAAGGCGGCTGGCGGCATTGGCATCCATATCCACAACATCCGCGCGG 26348 Query 363728 AGAACAGTTACATTCGC-GGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGT 363786 ||| |||| |||| ||||| || ||||| || || | || ||| | || Sbjct 26347 CCGGCAGCTACA-TCGCGGGCACCAACGGCACGTCGAACGGCCTCATGCCGATGATCCGC 26289 Query 363787 GTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTT 363846 |||| |||| || || | ||||| || ||||| || || |||||||| || || || Sbjct 26288 GTGTGGAACAACACGGCCCGCTACGTTGATCAGGGCGGCGGTAAGCGCAAGGGCGCCTTC 26229 Query 363847 GCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAA---A 363903 || ||||| |||||||| || ||||| || || ||||| || |||| ||| Sbjct 26228 GCCATGTACCTCGAGCCGTGGCACGCCGACATCTTCGAGTTCCT---GCTCATGAAGCGC 26172 Query 363904 AACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGAC 363963 ||||| || || ||||| ||| || || || || ||||| || || ||| | | ||| Sbjct 26171 AACACTGGCAAGGAGGACCAGCGCGCGCGCGACCTCTTCTACGCGCTCTGGATCCCGGAC 26112 Query 363964 CATTTTATGAAGCGCGTG--GAGGCAGGTAAGAATTGGTCACTCTTTTGCCC--ACACGA 364019 | || |||||||||||| ||| ||| || ||| | ||| | ||| |||||| Sbjct 26111 CTCTTCATGAAGCGCGTGAAGAGTGAGG--GCAAGTGGACGCTCATGGACCCCAACACGA 26054 Query 364020 ATGTCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGA 364079 || || || ||| || || || | | || ||||| ||| || Sbjct 26053 --CGCCCGGCCTCAGCGACTGCCACGGCGAGGAGTTCGAGAAGCTCTACGAGGGGTACGA 25996 Query 364080 ATCGGAGGGAAAGGCTCGTAAG-ACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGG 364138 | || |||| | || | | | || | | || ||| |||| ||||||||||| ||| Sbjct 25995 AGCGAAGGGTATGG-GCATCCGCACCGTCCAGGCGCAGGAGCTGTGGTTTGCCATTCTGG 25937 Query 364139 ATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGT 364198 | || ||||| || || || || | ||| | ||||| ||| | |||||| ||||| Sbjct 25936 AGTCTCAGATCGAAACGGGCGTGCCGTTCATGCTCTACAAGGATGCCTGCAACGCCAAGT 25877 Query 364199 CCAACCAGCAGCACCTTGGTACAATTCAGCAGAGC---AACCTATGTACCGAGATTATTG 364255 | ||||||||| |||| || || | ||| || || ||||| || || ||||| || | Sbjct 25876 CGAACCAGCAGAACCTCGGCACCA-TCA--AGTGCTCTAACCTGTGCACGGAGATCATCG 25820 Query 364256 AATACACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGT 364315 | |||||| | |||||||| || || || ||||| || ||||||||||| | || Sbjct 25819 AGTACACCTCGAAGGACGAGACGGCGGTGTGCAACCTGGCCTCGATCGCGCTGTCCAAGT 25760 Query 364316 TTGTAAA-----AGATGGTAC--TTTTGACCACCAGCATCTTTATGACGTAACCTATCAT 364368 |||| || ||| | || ||||||||||||| || ||||| || || | | Sbjct 25759 TTGTGAACCGCGAGA-AGAACGAGTTTGACCACCAGCGGCTCTATGAGGTGACGAAGGAG 25701 Query 364369 GCTACTTGCAATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGA-AGCCGA 364427 || | ||| ||| || || || ||| || || || || || || ||||| Sbjct 25700 ATCACCTACAACCTCAACCGTGTCATAGACCGAAACTACTA-CCCCGTCGAGACCGCCGA 25642 Query 364428 GCGTTCTAATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTT 364487 ||| || ||||| || ||||| || || || || || ||||||||||| |||| || Sbjct 25641 GCGCAGCAACATGCGCCACCGCCCCATCGGCCTCGGCGTGCAGGGCCTCGCAGACGCCTT 25582 Query 364488 TATGATGCTCAAGATGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTT 364547 ||||| | | | || || || || | || || |||| ||||| Sbjct 25581 CTGCCTGCTCCGGCTCTCCTTCACGAGCCCGGAGGCGCAGCGCCTCAACGAGGACATCTT 25522 Query 364548 TGAAACAATGTATTTTGCCGCAAT-GACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAA 364606 || || || || | | ||| | || | || |||| || |||| |||| Sbjct 25521 CGAGACCATCTACTACGGCGCGGTGGAGTCCTCCGTG-GACCTGGCGGCGGTGGAGGGCC 25463 Query 364607 AGTACTCTACTTATGAGGGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGA 364666 ||| || | |||| ||| ||| |||| | ||||| || || |||| Sbjct 25462 CCTACGAGACGTTCCAGGGCAGCCCCGCGTCGAAGGGGCTGCTGCAGTTCGACCTGTGGA 25403 Query 364667 ATGTCACGCC----ATCTGTCCGATGGAACTGGGATACGCT-ACGTTCCAACGTTAAGAA 364721 | | ||||| | | | ||| ||| |||||| | | | | | ||| | | Sbjct 25402 AGGAGACGCCGAAGAGC-GGCCGCTGGGACTGGGCGGCCTTGAAGAAGC-GCGTCGTGGA 25345 Query 364722 GCATGGTACTCGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGAT 364781 | ||| | |||||||| || | ||||| ||||| || || || || | ||||| Sbjct 25344 GGTTGGCATGCGCAACTCGCTGCTCCTCGCGCCGATGCCGACCGCCTCCACGTCGCAGAT 25285 Query 364782 CCTCGGAAACAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCT 364841 || || ||||||||||||||||| || || || ||| | || ||||| || || Sbjct 25284 TCTGGGCAACAACGAGTGCTTCGAGCCCTTCACCTCCAACATCTACGTGCGCCGCGTGCT 25225 Query 364842 TTCCGGAGAATTTCCGGTAGTTAATAAGTACCTAGTCAAGGA--TCTTTCCGACCGCGGG 364899 ||| || || || || || || |||||||| || | ||| || ||| | ||||| Sbjct 25224 GAGCGGCGAGTTCCCCGTTGTGAACAAGTACCTCGTGATGGACCTCATTC--AGCGCGGC 25167 Query 364900 CTGTGGGGTGACAGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATT 364959 |||||| | |||| || ||| | |||||| || || || || ||||||||| | Sbjct 25166 CTGTGGAGCGACAAGATCCGCAACGAGATCATCACCTTCAACGGGTCGGTGCAGAACGTG 25107 Query 364960 CCAGGATTTCCAGAAGATCTG---AAGCCTATTTACAAAACCGTATGGGAAATTTCCATG 365016 | | || | || ||| ||| | ||| ||||| ||||| || || | Sbjct 25106 ATGGACATCCCCGCGGACCTGCGCGAGC---TCTACCGCACCGTCTGGGAGATCTCGCAG 25050 Query 365017 CGAACTCTCATTGATATGGCGGCCGATCGCG----GTGCTTTTATCTGTCAGAGCCAGTC 365072 || || ||||| || ||||| |||| |||| || | || ||| ||| ||||| Sbjct 25049 CGCACCCTCATCGACATGGCCGCCGCGCGCGGCAAGTACATTGATCAGTC----GCAGTC 24994 Query 365073 GTTTAACGTATTCATGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGG 365132 | ||| | ||| || || |||||| || | || |||||||| ||| || | Sbjct 24993 CATGAACTTGTTCCTGGAGAGCCCCTCCTCCGGTCAGATCACGTCCATGCACTTCCACTG 24934 Query 365133 GTGGAAATCCGGTCTTAAGACAGG 365156 ||||| ||||| || ||||| || Sbjct 24933 CTGGAAGTCCGGGCTCAAGACGGG 24910 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303303468947564