Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20culicis_20[genbank_20GCA_5F000482145.1_202013-10-25] 3,002 sequences; 23,587,153 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq2 192 6e-44 seq1609 187 2e-42 seq866 170 2e-37 seq36 125 7e-24 seq782 114 1e-20 seq2803 111 1e-19 seq455 109 5e-19 seq257 109 5e-19 >seq2 Length=121565 Score = 192 bits (212), Expect = 6e-44 Identities = 514/770 (67%), Gaps = 27/770 (4%) Strand=Plus/Plus Query 145625 GCGATCGACGCCAAATTACAAACTGCCGTCTCCTCGGCGTCGC--TGTATTGTACGATCT 145682 |||||||| |||| || || || |||||||| || | ||| |||| | | ||||| Sbjct 25771 GCGATCGAGGCCAGGTTGCACACCGCCGTCTCGTC--CTTCGAGGTGTACTCGATGATCT 25828 Query 145683 CGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGATT--ACTTTTCCTGTT 145740 | | ||||| || || |||||||| || || || ||||| || |||| | ||| Sbjct 25829 CCGTGCACAGGTTAGAGCACTTGATGGTGCCGAGGTTCTGCTGGTTCGACTTGGC--GTT 25886 Query 145741 GCACGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCGTCTCCACGATA-- 145798 ||| || ||||||||||||||| |||| |||| || || | ||| | ||||| || Sbjct 25887 GCAGGCATCCTTGTAGAGCATGAACGGCACGCCCGTTTCGATCTGAGACTCCAGAATGGC 25946 Query 145799 AAACGGTGCAAGTCCTGCGCACGCACCTGCTGCTGGTAGCGGCCCTCTTC--TTCGTATT 145856 |||| || |||||||| | || | ||| | | | | |||| |||||| Sbjct 25947 AAACCA--CAGCTCCTGCGCCTGGAC--GGTGCGGATGCCCATACCCTTCGCTTCGTACC 26002 Query 145857 TCCTGTAGAGCTCCTCAAACGCGGAACCGTAGCAATCGGACAGGCCGGGACACTTGTTGG 145916 | |||||||| ||| ||| | |||| ||| ||| |||||||| | |||||| Sbjct 26003 CCTCGTAGAGCTTCTCGAACTCCTCGCCGTGGCAGTCGCTGAGGCCGGGCGTCGTGTTGG 26062 Query 145917 GACACATCAGCGACCATACGCCGTTGGCGTTGACGCGCTCCATAAACAAATCTGGCACCC 145976 | ||| |||| ||| ||| | || ||||||| ||| || | || || | || Sbjct 26063 GGTCCATGAGCGTCCACTTGCCCTCACTCTTCACGCGCTTCATGAAGAGGTCCGGGATCC 26122 Query 145977 ACAGCGCGTACATCAAGTCGCGCGCTTTGCAATCCTCAGCACCCATGTTTCGCTTCAA-A 146035 | |||||||| | | ||||||||| ||||| || |||| ||||||| | Sbjct 26123 AGAGCGCGTAGAAGAGGTCGCGCGCGCGCTGGTCCTCCTTGCCAGTGTTGCGCTTCATGA 26182 Query 146036 TTAAGCACACTATAGATGTCCGCGTGCCACGGTTCAATATAGACGGCGAGGGCTCCTTTT 146095 | | || | | ||||||| ||||||||||| || | || | ||||| ||| || || Sbjct 26183 GCAGGAACTCGA-AGATGTCGGCGTGCCACGGCTCGAGGTACATGGCGAAGGCGCCCTTG 26241 Query 146096 CGTTT---GCCACCCTGGTCCACGTGACGTACCATGTTGTTAAAGACGCGCACCATGGGC 146152 || || ||| ||||| || |||| || || ||||||| | ||||| | ||| ||| Sbjct 26242 CGCTTACCGCCGCCCTGATCAACGTAGCGGGCCGTGTTGTTCCACACGCGGATCATCGGC 26301 Query 146153 TCGACGCCGCTGGCTACGCCGTTCGTAGAGTTTATTCTGGTGCCGCGGGAGCGCACGCAA 146212 || |||| | | |||||| || || | ||||| | ||| | | Sbjct 26302 ATGAGGCCGTTCGACGTGCCGTTGGTGCCCGCGATGTAGCTGCCGGCCGCGCGGATGTTG 26361 Query 146213 TGAACATTCACGCCGAGACCGCC-GCCGTACTTGGATATAGCGGCGCAGTCGCCGAGCGT 146271 || | || | ||| | ||||| |||| |||| || ||||||| || ||||| Sbjct 26362 TGGATATGGATGCCAATGCCGCCAGCCG-CCTTGCTGATCACGGCGCACTCCTTCAGCGT 26420 Query 146272 CTCGTAGATGCCGTCAATGCTATCG--CTTCGAATGCCGAGCAGAAAGCACGAGCACATC 146329 ||||||||||| || ||||| ||| |||| || ||| ||| |||||||||| |||| Sbjct 26421 GTCGTAGATGCCCTCGATGCTGTCGTCCTTC--ATCGCGACCAGGAAGCACGAGCTCATC 26478 Query 146330 TGCGCCATCGGCGTCCCCGCCGAGAACAACGTCGGGCTCGCGTGCGTAAA 146379 |||| | | || || || || ||| | ||| ||| | |||||||| || Sbjct 26479 TGCGGCTTGGGGGTACCGGCGTTGAAGAGCGTGGGGGTGGCGTGCGTGAA 26528 >seq1609 Length=2085 Score = 187 bits (206), Expect = 2e-42 Identities = 342/498 (69%), Gaps = 5/498 (1%) Strand=Plus/Plus Query 46099 AAGAAAACCGACTGGGCGATGAAGTGGATCAACAGCAGCACCGCGACTTTCGCCGAGCGT 46158 ||||| || ||||||| || |||||| ||||| |||| | ||| ||||| Sbjct 1089 AAGAAGGCCAACTGGGCCGTGCGCTGGATCG---GCAGCGCCGCCAGCTTCCAGGAGCGG 1145 Query 46159 ATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGTTTTGCCGCCATCTTT 46218 | | | ||| ||| || |||||| |||| || || ||| || | ||||||| Sbjct 1146 CTCATCGGCTTCGCGGCCGTCGAGGGCATCTTCTTCTCCGGCTCCTTCTGCTCCATCTTC 1205 Query 46219 TACATCAAAACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAACGAGCTGATATCGCGC 46278 | |||| | ||| | ||||||||||| || || ||||||||||| || |||||| Sbjct 1206 TGGCTCAAGAAGCGCGGCGTGATGCCCGGCCTCACCTTCAGCAACGAGCTCATCTCGCGC 1265 Query 46279 GACGAGGGCCTGCATACGGACTTTGCGTGTCTCTACTATAACACTCGCGTGCACGACAAG 46338 |||||||||||||| || ||||| || || || || |||| | | | | ||||| Sbjct 1266 GACGAGGGCCTGCACACCGACTTCGCCTGCCTGCTGTACAACAGCCACATCAAACACAAG 1325 Query 46339 CTTGCGCCCGACACCGTGCTGAGCATGTTCAAGGAGGCGGTGGCCATTGAGAAGGAGTTT 46398 || ||| ||| ||||||| ||| ||| || || || | ||| ||||||||||| Sbjct 1326 CTGCCGCGCGAGCGCGTGCTGGACATCATCACCGACGCCGTCGTCATCGAGAAGGAGTTC 1385 Query 46399 TTTACGGCCGCACTGCCCGCTGC-CCTGCTGGGCATGAACGCACAGTCAATGTGCGACTA 46457 | | ||| ||||||| ||| ||| | ||||||||||| | ||| || | || Sbjct 1386 ATCTGCGACGCGCTGCCCG-TGCGCCTCATCGGCATGAACGCCGACCTCATGAGCCAGTA 1444 Query 46458 CATCGAGTTTGTAGCGGACCGACTGCTCGTGCAGCTTCACCAGCCGAAGCATTTTCACGC 46517 ||||||||| || |||||||| ||||||||| ||| || | |||||| | || | Sbjct 1445 CATCGAGTTCGTCGCGGACCGCCTGCTCGTGTCGCTGGGCCTGGAGAAGCACTACAACTC 1504 Query 46518 GCGCAATCCATTTGAGTTTATGAACAACATCTCCCTGGAGGGCAAAACTAATTTTTTCGA 46577 ||| || || || || ||| | | |||||||| ||||| || || || ||||| Sbjct 1505 CACCAACCCCTTCGACTTCATGGAGATGATCTCCCTCACCGGCAAGACCAACTTCTTCGA 1564 Query 46578 AAAGCGCGTCGGCGAGTA 46595 ||| |||| |||||| Sbjct 1565 GAAGAAGGTCGCCGAGTA 1582 >seq866 Length=6634 Score = 170 bits (188), Expect = 2e-37 Identities = 257/363 (71%), Gaps = 2/363 (1%) Strand=Plus/Plus Query 46234 GGCATCATGCCCGGCCTGACGTTTAGCAACGAGCTGATATCGCGCGACGAGGGCCTGCAT 46293 ||| | ||||||||||| || || ||||||||||| || |||||||||||||||||||| Sbjct 20 GGCGTGATGCCCGGCCTCACCTTCAGCAACGAGCTCATCTCGCGCGACGAGGGCCTGCAC 79 Query 46294 ACGGACTTTGCGTGTCTCTACTATAACACTCGCGTGCACGACAAGCTTGCGCCCGACACC 46353 || ||||| || || || || |||| | | | ||||||| ||| ||| | Sbjct 80 ACCGACTTCGCCTGCCTGCTGTACAACAGCTACATCAAGCACAAGCTGCCGCGCGAGCGC 139 Query 46354 GTGCTGAGCATGTTCAAGGAGGCGGTGGCCATTGAGAAGGAGTTTTTTACGGCCGCACTG 46413 |||||| ||| ||| || || || | ||| ||||||||||| | | ||| ||| Sbjct 140 GTGCTGGACATCATCACCGACGCCGTCGTCATCGAGAAGGAGTTCATCTGCGACGCGCTG 199 Query 46414 CCCGCTGC-CCTGCTGGGCATGAACGCACAGTCAATGTGCGACTACATCGAGTTTGTAGC 46472 |||| ||| ||| | ||||||||||| | ||| || | ||||||||||| || || Sbjct 200 CCCG-TGCGCCTCATCGGCATGAACGCCGACCTCATGAGCCAGTACATCGAGTTCGTCGC 258 Query 46473 GGACCGACTGCTCGTGCAGCTTCACCAGCCGAAGCATTTTCACGCGCGCAATCCATTTGA 46532 |||||| ||||||||| ||| || | |||||| | || | ||| || || || Sbjct 259 GGACCGCCTGCTCGTGTCGCTGGGCCTGGAGAAGCACTACAACTCCACCAACCCCTTCGA 318 Query 46533 GTTTATGAACAACATCTCCCTGGAGGGCAAAACTAATTTTTTCGAAAAGCGCGTCGGCGA 46592 || ||| | | |||||||| ||||| || || || ||||| ||| |||| ||| Sbjct 319 CTTCATGGAGATGATCTCCCTCACCGGCAAGACCAACTTCTTCGAGAAGAAGGTCGCCGA 378 Query 46593 GTA 46595 ||| Sbjct 379 GTA 381 >seq36 Length=60674 Score = 125 bits (138), Expect = 7e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || ||||| | |||||||| | || | || |||||||| ||||||||||| || Sbjct 7264 CCGCCGCGGAGGCGCAGCACGAGGTGCAGCGTGGACTCCTTCTGAATGTTGTAGTCCGCG 7205 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||||| ||||||||||| ||| |||| | |||||||||||||| ||| Sbjct 7204 AGCGTGCGGCCCTCCTCGAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCCGGCGGG 7145 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||| | | ||| | || ||| | | ||||| Sbjct 7144 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTCGCCTCGACC 7085 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGA 131236 |||| || | || || ||||| ||||| || ||||| |||||||||| Sbjct 7084 TCGAGGGCGATCGTCTTGCCGGTCAGAGTCTTCACGAAGATCTGCATGA 7036 >seq782 Length=7656 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||||| ||| ||||| | || | ||||||||||| || |||||||| || Sbjct 7411 CCACCGCGCAGACGGAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCG 7470 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||||| |||||||| || || |||| | |||||||||||||||||| Sbjct 7471 AGCGTACGGCCCTCCTCCAGCTGCTTACCAGCAAAGATCAGGCGCTGCTGGTCCGGAGGG 7530 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| ||| ||| | | ||| | || ||| | | ||| | Sbjct 7531 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCACC 7590 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | || | || || ||||| || || || ||||| ||||||||| Sbjct 7591 TCCAGGGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATG 7638 >seq2803 Length=585 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| ||||||| ||| ||||| | || | ||||||||||| || |||||||| || Sbjct 13 GCCGCCGCGCAGACGGAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGC 72 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | || || ||||| |||||||| || || |||| | ||||||||||||||||| Sbjct 73 GAGCGTACGGCCCTCCTCCAGCTGCTTACCAGCAAAGATCAGGCGCTGCTGGTCCGGAGG 132 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| || || ||||| ||| ||| ||| | | ||| | || ||| | | ||| | Sbjct 133 GATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCAC 192 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | || | || || ||||| || || || ||||| ||||||||| Sbjct 193 CTCCAGGGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATG 241 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| ||||||| ||| ||||| | || | ||||||||||| || |||||||| || Sbjct 241 GCCGCCGCGCAGACGGAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGC 300 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | || || ||||| |||||||| || || |||| | ||||||||||||||||| Sbjct 301 GAGCGTACGGCCCTCCTCCAGCTGCTTACCAGCAAAGATCAGGCGCTGCTGGTCCGGAGG 360 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| || || ||||| ||| ||| ||| | | ||| | || ||| | | ||| | Sbjct 361 GATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCAC 420 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | || | || || ||||| || || || ||||| ||||||||| Sbjct 421 CTCCAGGGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATG 469 >seq455 Length=15778 Score = 109 bits (120), Expect = 5e-19 Identities = 168/239 (70%), Gaps = 2/239 (1%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| ||||||| ||| ||||| | || | ||||||||||| || |||||||| || Sbjct 10 GCCGCCGCGCAGACGGAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGC 69 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | || || ||||| |||||||| || || |||| | ||||||||||||||||| Sbjct 70 GAGCGTACGGCCCTCCTCCAGCTGCTTACCAGCAAAGATCAGGCGCTGCTGGTCCGGAGG 129 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| || || ||||| ||| ||| ||| | | ||| | || ||| | | ||| | Sbjct 130 GATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCAC 189 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG--ACTTATTT 131243 || | || | || || ||||| || || || || || ||||||||| | |||||| Sbjct 190 CTCCAGGGCGATCGTCTTGCCGGTCAGCGTCTTCACAAAGATCTGCATGGTAATTATTT 248 >seq257 Length=25438 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || ||||||| |||||||| | || | || |||||||| || |||||||| || Sbjct 22230 CCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCG 22289 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||||| ||||||||||| || |||| | |||||||||||||||||| Sbjct 22290 AGCGTGCGGCCCTCCTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGAGGG 22349 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| ||| ||| | | ||| | || ||| | | ||| | Sbjct 22350 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCACC 22409 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | || | || || ||||| || || || ||||| || |||||| Sbjct 22410 TCCAGGGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATTTGCATG 22457 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471995087719680