Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20culicis_20[genbank_20GCA_5F000482145.1_202013-10-25] 3,002 sequences; 23,587,153 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq257 91.5 1e-13 seq36 87.8 2e-12 seq2 87.8 2e-12 >seq257 Length=25438 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || | ||||| || ||| || | || || ||||| | | | Sbjct 22456 ATGCAAATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCCCTGGAGGTGGAGGCGAGC 22397 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | | || || || || ||||||||||| || || || || || Sbjct 22396 GACACGATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCAG 22337 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || ||||| ||||| ||| | ||||| |||||| || | || |||||| Sbjct 22336 CAGCGCCTGATCTTTGCTGGCAAGCAGCTCGAGGAGGGCCGCACGCTCGCGGACTACAAC 22277 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || || ||||| | || | || |||| ||||||| ||| Sbjct 22276 ATCCAGAAGGAGTCCACGCTGCACCTGGTGCTGCGCCTGCGCGGCGGT 22229 >seq36 Length=60674 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || ||| | ||||| || ||| || | || || || || | | | Sbjct 7038 ATGCAGATCTTCGTGAAGACTCTGACCGGCAAGACGATCGCCCTCGAGGTCGAGGCGAGC 7097 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | | || || || || ||||||||||| || || || || || Sbjct 7098 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAG 7157 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || || ||||| ||| | ||||| |||||| || | || |||||| Sbjct 7158 CAGCGCCTCATCTTCGCTGGCAAGCAGCTCGAGGAGGGCCGCACGCTCGCGGACTACAAC 7217 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| || || ||||| | || | || |||| | ||||| ||| Sbjct 7218 ATTCAGAAGGAGTCCACGCTGCACCTCGTGCTGCGCCTCCGCGGCGGT 7265 >seq2 Length=121565 Score = 87.8 bits (96), Expect = 2e-12 Identities = 264/401 (66%), Gaps = 9/401 (2%) Strand=Plus/Plus Query 129998 TCCACATTCCATC-CGCTTCGACTCGTTTCATAAACAAATCGGGTACCCACAGGGCGTAC 130056 ||||| | || || | |||| || || ||||| || | || || | ||| || ||||| Sbjct 26075 TCCACTTGCCCTCACTCTTC-ACGCGCTTCATGAAGAGGTCCGGGATCCAGAGCGCGTAG 26133 Query 130057 AACAAATCTCGCGCTTTTCTATCCTCGGCACCCATGTTACGTTTCAGTTCAAGGAAATCG 130116 || | || ||||| ||||| || |||| || |||| ||||| ||| Sbjct 26134 AAGAGGTCGCGCGCGCGCTGGTCCTCCTTGCCAGTGTTGCGCTTCATGAGCAGGAACTCG 26193 Query 130117 TAAATGTCGGCGTGCCACGGTTCAACATAAATTGCCATTGCGCCCTTCCGTTT---GCCC 130173 | ||||||||||||||||| || | || || || | |||||||| || || ||| Sbjct 26194 AAGATGTCGGCGTGCCACGGCTCGAGGTACATGGCGAAGGCGCCCTTGCGCTTACCGCCG 26253 Query 130174 CCTTGGTCAACGTGGCGCACGGCATTGTTGTAGACTCGCAACATTGCCTCCAATCCGTTG 130233 || || ||||||| ||| | | ||||| | || || | ||| | | | ||||| Sbjct 26254 CCCTGATCAACGTAGCGGGCCGTGTTGTTCCACACGCGGATCATCGGCATGAGGCCGTTC 26313 Query 130234 GCCGTGCCGTTTGTGCTCTCAATGAAACTGCCACGAGCCCGAACGTTATGAACGCTTAGA 130293 | ||||||||| |||| | | ||| | ||||| || || | ||| || | | Sbjct 26314 GACGTGCCGTTGGTGCCCGCGATGTAGCTGCCGGCCGCGCGGATGTTGTGGATATGGATG 26373 Query 130294 CCTATGCCGCC-GCCAAATT-TTGATATCAACGCGCAATCGCGTAGCGTTTCATAAATGC 130351 || |||||||| ||| || || |||| ||||| || ||||| || || |||| Sbjct 26374 CCAATGCCGCCAGCCGCCTTGCTG--ATCACGGCGCACTCCTTCAGCGTGTCGTAGATGC 26431 Query 130352 CAACGATACTGTCTTCTTTAATGTTTAGGAGGAAACACGAG 130392 | |||| ||||| || || || | ||||| |||||| Sbjct 26432 CCTCGATGCTGTCGTCCTTCATCGCGACCAGGAAGCACGAG 26472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419712643464130