Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20culicis_20[genbank_20GCA_5F000482145.1_202013-10-25] 3,002 sequences; 23,587,153 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq1609 152 1e-31 seq866 134 3e-26 seq227 131 3e-25 >seq1609 Length=2085 Score = 152 bits (168), Expect = 1e-31 Identities = 276/402 (69%), Gaps = 5/402 (1%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||| || ||||| | ||||||||||||||||||||| ||| Sbjct 1564 TCGAAGAAGTTGGTCTTGCCGGTGAGGGAGATCATCTCCATGAAGTCGAAGGGGTTGGTG 1505 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 | ||||| ||||| |||| || | |||| | |||||| || || ||||| | Sbjct 1504 GAGTTGTAGTGCTTCTCCAGGCCCAGCGACACGAGCAGGCGGTCCGCGACGAACTCGATG 1445 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 ||||| | ||| || || | ||||||||| || | || || | || || |||||| Sbjct 1444 TACTGGCTCATGAGGTCGGCGTTCATGCCGATGAGGCGCACGGGCAGCGCGTCGCAGATG 1385 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGACAGC 251802 || ||||| ||| || | || || || | || || ||| | | | | |||| Sbjct 1384 AACTCCTTCTCGATGACGACGGCGTCGGTGATGATGTCCAGCACGCGCTCGCGCGGCAGC 1325 Query 251803 TTGTTCTCCA----GCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTC 251858 |||| | | ||| | |||||| || | | || | |||||| |||||||| Sbjct 1324 TTGTGTTTGATGTGGCTGT-TGTACAGCAGGCAGGCGAAGTCGGTGTGCAGGCCCTCGTC 1266 Query 251859 GCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCA 251918 ||| ||||| ||||||| | ||||| |||||||| || || ||| ||||||| Sbjct 1265 GCGCGAGATGAGCTCGTTGCTGAAGGTGAGGCCGGGCATCACGCCGCGCTTCTTGAGCCA 1206 Query 251919 GAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGAC 251960 |||||| | ||| ||||| || ||||| | | |||||||| Sbjct 1205 GAAGATGGAGCAGAAGGAGCCGGAGAAGAAGATGCCCTCGAC 1164 >seq866 Length=6634 Score = 134 bits (148), Expect = 3e-26 Identities = 249/364 (68%), Gaps = 5/364 (1%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||| || ||||| | ||||||||||||||||||||| ||| Sbjct 363 TCGAAGAAGTTGGTCTTGCCGGTGAGGGAGATCATCTCCATGAAGTCGAAGGGGTTGGTG 304 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 | ||||| ||||| |||| || | |||| | |||||| || || ||||| | Sbjct 303 GAGTTGTAGTGCTTCTCCAGGCCCAGCGACACGAGCAGGCGGTCCGCGACGAACTCGATG 244 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 ||||| | ||| || || | ||||||||| || | || || | || || |||||| Sbjct 243 TACTGGCTCATGAGGTCGGCGTTCATGCCGATGAGGCGCACGGGCAGCGCGTCGCAGATG 184 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGACAGC 251802 || ||||| ||| || | || || || | || || ||| | | | | |||| Sbjct 183 AACTCCTTCTCGATGACGACGGCGTCGGTGATGATGTCCAGCACGCGCTCGCGCGGCAGC 124 Query 251803 TTGTTC----TCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTC 251858 |||| | | |||| | |||||| || | | || | |||||| |||||||| Sbjct 123 TTGTGCTTGATGTAGCTGT-TGTACAGCAGGCAGGCGAAGTCGGTGTGCAGGCCCTCGTC 65 Query 251859 GCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCA 251918 ||| ||||| ||||||| | ||||| |||||||| || || ||| ||||||| Sbjct 64 GCGCGAGATGAGCTCGTTGCTGAAGGTGAGGCCGGGCATCACGCCGCGCTTCTTGAGCCA 5 Query 251919 GAAG 251922 |||| Sbjct 4 GAAG 1 >seq227 Length=26954 Score = 131 bits (144), Expect = 3e-25 Identities = 235/340 (69%), Gaps = 10/340 (3%) Strand=Plus/Minus Query 218518 GACTTCATCGACAAGGAGCTCATTCTTTTCTC----GCGGTATGATGTGGAGCGTTCTAT 218573 || ||| ||||||||||||| ||||| ||||| |||| || |||||||| || Sbjct 17025 GAGTTCGTCGACAAGGAGCTGATTCTCTTCTCCATCGCGGACTGC----GAGCGTTCGAT 16970 Query 218574 TCCCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAA 218633 ||| |||| |||||| ||| ||||||| ||||| ||||||||||| || | || Sbjct 16969 TCCGAGCGCGGTGGACGGCTTCAAGCCCGGCCAGCGCAAGATCCTCTTCTCCTGCCTGAA 16910 Query 218634 GCGGAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTC 218693 ||| |||||| | | || ||||| | ||| | || || || || || || || Sbjct 16909 GCGCAACCTGACCAAGGCGATCAAGGTGGTGCAGCTGTCCGGGTACGTGTCGGAGCACTC 16850 Query 218694 TGGCTACCATCACGGTGAGCAGAGTCTGCAGGGTG-CCATTGTAGGCATGGCACAGGACT 218752 || |||||| || || |||||| || || | | || || |||||||| ||| ||| Sbjct 16849 TGCCTACCACCATGGCGAGCAGTCGCT-CATCCAGACGATCGTCGGCATGGCGCAGAACT 16791 Query 218753 ATGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCTAT 218812 ||||| || |||||| || |||||| || |||||||||| ||| | || || Sbjct 16790 TCGTGGGGAGCAACAACGTGCCGCTGCTGCGGCCGGACGGTCAGTTCGGTACGCGGCTGC 16731 Query 218813 TGGGTGGAAAGGATAGTGCTTCTGCCAGGTATATCTTTAC 218852 ||| || ||||| || | || |||| |||||||| Sbjct 16730 AGGGCGGCAAGGACCACGCCGCCGCGCGGTACATCTTTAC 16691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027797266184682