Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20culicis_20[genbank_20GCA_5F000482145.1_202013-10-25] 3,002 sequences; 23,587,153 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq1609 192 1e-43 seq866 161 2e-34 seq655 156 8e-33 seq36 154 3e-32 seq257 147 4e-30 seq2 120 6e-22 seq583 89.7 9e-13 seq126 87.8 3e-12 seq40 87.8 3e-12 >seq1609 Length=2085 Score = 192 bits (212), Expect = 1e-43 Identities = 328/470 (70%), Gaps = 17/470 (4%) Strand=Plus/Minus Query 9934 TCATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCT 9993 |||||||||| |||||||||||||| | ||| |||||||||||||| |||||| Sbjct 1602 TCATGACGCCGGCCTTCTGGTACTCGGCGACCTTCTTCTCGAAGAAGTTGGTCTTGCCGG 1543 Query 9994 CGAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAAC 10053 |||||| || | |||||||||||| |||||||| || | | ||||| | Sbjct 1542 TGAGGGAGATCATCTCCATGAAGTCGAAGGGGTTGGTGGAGTTGTAGTGCTTCTCCAGGC 1483 Query 10054 CGAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGT 10113 | || | || | |||||| || ||||||||||||||||||||||| ||||| | || Sbjct 1482 CCAGCGACACGAGCAGGCGGTCCGCGACGAACTCGATGTACTGGCTCATGAGGTCGGCGT 1423 Query 10114 TCATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACCG 10173 ||||||| || | ||| ||| | |||||||| ||||| ||||| ||| || |||| | Sbjct 1422 TCATGCCGATGAGGCGCACGGGCAGCGCGTCGCAGATGAACTCCTTCTCGATGACGACGG 1363 Query 10174 CTTCCTCGACGATGCTCTTTACCACG---TCAAGGGACAGCTTGTTCTCGA----GCT-T 10225 | ||| |||| | | | |||| || | | |||||||| | || ||| | Sbjct 1362 ---CGTCGGTGATGATGTCCAGCACGCGCTCGCGCGGCAGCTTGTGTTTGATGTGGCTGT 1306 Query 10226 CGAATACAGGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTT 10285 | ||||| || | || | ||| |||||||||||||| ||||| |||||| Sbjct 1305 TG--TACAGCAGGCAGGCGAAGTCGGTGTGCAGGCCCTCGTCGCGCGAGATGAGCTCGTT 1248 Query 10286 GGACAAACCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACGA 10345 | || || |||||||| | || || || |||||||| |||| |||||| || Sbjct 1247 GCTGAAGGTGAGGCCGGGCATCACGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGGA 1188 Query 10346 CCCGGAGAACAGAAGA--CCCTCCACGCACACCCAGGCGACGAGGCGCTC 10393 ||||||| |||||| ||||| ||| | | || ||| ||| ||||| Sbjct 1187 GCCGGAGA--AGAAGATGCCCTCGACGGCCGCGAAGCCGATGAGCCGCTC 1140 >seq866 Length=6634 Score = 161 bits (178), Expect = 2e-34 Identities = 281/405 (69%), Gaps = 13/405 (3%) Strand=Plus/Minus Query 9934 TCATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCT 9993 |||||||||| |||||||||||||| | ||| |||||||||||||| |||||| Sbjct 401 TCATGACGCCGGCCTTCTGGTACTCGGCGACCTTCTTCTCGAAGAAGTTGGTCTTGCCGG 342 Query 9994 CGAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAAC 10053 |||||| || | |||||||||||| |||||||| || | | ||||| | Sbjct 341 TGAGGGAGATCATCTCCATGAAGTCGAAGGGGTTGGTGGAGTTGTAGTGCTTCTCCAGGC 282 Query 10054 CGAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGT 10113 | || | || | |||||| || ||||||||||||||||||||||| ||||| | || Sbjct 281 CCAGCGACACGAGCAGGCGGTCCGCGACGAACTCGATGTACTGGCTCATGAGGTCGGCGT 222 Query 10114 TCATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACCG 10173 ||||||| || | ||| ||| | |||||||| ||||| ||||| ||| || |||| | Sbjct 221 TCATGCCGATGAGGCGCACGGGCAGCGCGTCGCAGATGAACTCCTTCTCGATGACGACGG 162 Query 10174 CTTCCTCGACGATGCTCTTTACCACG---TCAAGGGACAGCTTGTTCTCG----AGCT-T 10225 | ||| |||| | | | |||| || | | |||||||| || | |||| | Sbjct 161 ---CGTCGGTGATGATGTCCAGCACGCGCTCGCGCGGCAGCTTGTGCTTGATGTAGCTGT 105 Query 10226 CGAATACAGGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTT 10285 | ||||| || | || | ||| |||||||||||||| ||||| |||||| Sbjct 104 TG--TACAGCAGGCAGGCGAAGTCGGTGTGCAGGCCCTCGTCGCGCGAGATGAGCTCGTT 47 Query 10286 GGACAAACCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAA 10330 | || || |||||||| | || || || |||||||| Sbjct 46 GCTGAAGGTGAGGCCGGGCATCACGCCGCGCTTCTTGAGCCAGAA 2 >seq655 Length=10332 Score = 156 bits (172), Expect = 8e-33 Identities = 323/479 (67%), Gaps = 4/479 (1%) Strand=Plus/Minus Query 268258 CCACATTGCTTCGACATAGTCCCGCGCATGGCCCCAATCGCGCTTTGCGTCCATGTTCCC 268317 |||||| | | || |||||| ||| |||||||| || ||| |||| || || || Sbjct 2492 CCACATGCCGTAAACGTAGTCCTTCGCGTGGCCCCAGTCCCGCAGCGCGTTCACATTGCC 2433 Query 268318 GAGGAACAGGCATTTCTGCTTGCCGAGCTTCACGCGTGCAAGACCGCGAGTG--ATTTTT 268375 ||| ||| ||||| |||||| ||| | ||| || ||||| | || || Sbjct 2432 GAGCGCCAGATCCTTCTGTTTGCCGTACTTAATGCG--CACCGCCGCGCGCACAATCTTC 2375 Query 268376 CGGGTCACGAACGTCTCGCCACGTAGAGGGCTCTCGTGGTTGAAGAGGATGCCGTTGCAC 268435 |||||||| || |||| || | || ||||||||||||||| ||||||||| Sbjct 2374 TTCGTCACGAATGTGGCGCCGCGGCGCGGCGACTCGTGGTTGAAGAGAATGCCGTTGGCG 2315 Query 268436 GCGAACATGCCATATGCCTCACGGTAGTTCACGACCGTCCAGTATGCAAACATCTTTGCA 268495 || ||||| ||||| ||||| |||||||| ||| ||||||| | ||| ||| ||| Sbjct 2314 GCAAACATACCATACGCCTCGCGGTAGTTGACGGTGATCCAGTAGCCGTACAGCTTCGCA 2255 Query 268496 ACTGCGTACGGAGAACGTGGATGGAAGGGCGTCGTGATCTTTTGAGGGATTTCTCGGACT 268555 || ||||| || || || | |||||||||||| | | || || | || | || Sbjct 2254 ACCGCGTAGGGGCTGCGGGGGTAGAAGGGCGTCGTCTCCGTCTGGGGCACCTCCTGCACC 2195 Query 268556 TTGCCAAAGAGCTCGGAGGTCGATGCTTGGTAGAACTTTGTTGTTTTTTCGAGACCGCAG 268615 ||| |||||||| || || || ||||||||||| || | |||| |||| | Sbjct 2194 AGGCCGTAGAGCTCGCTCGTGGAGGCCTGGTAGAACTTGCACGTCTGCTCGATCCCGCTG 2135 Query 268616 ATTCGGATTGCCTCGAGCAAACGAAGAGTTCCCATGCCATCCACGTCCGCTGTATACTCC 268675 ||||| || || |||| || || || || | || | | | | || |||||| Sbjct 2134 GAGCGGATCGCATCCAGCAGCTTCAGCGTGCCGATCGCGTCGGCCTGCCCCGTGTACTCC 2075 Query 268676 GGCATCTCGAATGACACCTGGACATGGCTCTGGGCGCCCAGGTTATAAACCTCATCCGG 268734 || ||||||| || |||| || ||| ||| || | ||||| || ||||| ||||| Sbjct 2074 GGGTTCTCGAAGGAAACCTTCACGTGGGACTGCGCCGCGAGGTTGTACACCTCGTCCGG 2016 >seq36 Length=60674 Score = 154 bits (170), Expect = 3e-32 Identities = 175/232 (75%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| ||||||| || | ||| ||||||||||| || || ||||| || || | | Sbjct 7264 CCGCCGCGGAGGCGCAGCACGAGGTGCAGCGTGGACTCCTTCTGAATGTTGTAGTCCGCG 7205 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| || ||||| ||||| | || ||||| || || Sbjct 7204 AGCGTGCGGCCCTCCTCGAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCCGGCGGG 7145 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413 ||||| |||||||| || ||||| ||||| ||| |||||||||||| ||| | || || Sbjct 7144 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTC-GCTCGCCTCGAC 7086 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465 || | || ||| || || || || || ||||| ||||| |||||||| ||| Sbjct 7085 CTCGAGGGCGATCGTCTTGCCGGTCAGAGTCTTCACGAAGATCTGCATGATG 7034 >seq257 Length=25438 Score = 147 bits (162), Expect = 4e-30 Identities = 171/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| ||||||| |||| ||| ||||||||||| || |||||||| || || | | Sbjct 22230 CCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCG 22289 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| || || || || || | || ||||| || || Sbjct 22290 AGCGTGCGGCCCTCCTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGAGGG 22349 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413 ||||| |||||||| || ||||| ||||| ||| |||||| ||||| ||| | || || Sbjct 22350 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTC-GCTCGCCTCCAC 22408 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| || ||| || || || || || ||||| ||||| || ||||| Sbjct 22409 CTCCAGGGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATTTGCAT 22456 >seq2 Length=121565 Score = 120 bits (132), Expect = 6e-22 Identities = 310/463 (67%), Gaps = 16/463 (3%) Strand=Plus/Plus Query 31701 CACACCGCCGTTTCGTCCGTAGAAGTGTATTCGACAATCTCGGCACAAAGATTGCTGCCC 31760 ||||||||||| |||||| | || ||||| |||| ||||| | || || || || | Sbjct 25789 CACACCGCCGTCTCGTCCTTCGAGGTGTACTCGATGATCTCCGTGCACAGGTTAGAGCAC 25848 Query 31761 GTGATGGTGCCGGCATTGGACTGCATGTTC---TTCACGTT-CACGCTGTCCTTGTTGAG 31816 ||||||||||| || |||| |||| || |||| || || ||||||| ||| Sbjct 25849 TTGATGGTGCCGAGGTT---CTGCTGGTTCGACTTGGCGTTGCAGGCA-TCCTTGTAGAG 25904 Query 31817 CACGTAAGGCATGCCCGTCTCGATCTGCGTGATGATCATCGCATTCCAGACATCGCGCGC 31876 || | | |||| |||||| |||||||| | | || ||| ||| | || |||| Sbjct 25905 CATGAACGGCACGCCCGTTTCGATCTGAGACTCCAGAATGGCAAACCACAGCTCCTGCGC 25964 Query 31877 TTTGACGACTTTC---TTCGCACGCCCCTCGGACTCGTAGCGAAGATACAGGTCCTCGTA 31933 | |||| | | | | || ||| ||| ||||| | || || | |||| | Sbjct 25965 CTGGACGG--TGCGGATGCCCATACCCTTCGCT-TCGTACCCCTCGTAGAGCTTCTCGAA 26021 Query 31934 CTCCTTGCCAAAGGCA-TCGGTTAGACCGGGACACTCCTTGGGGTCGAAGAGCGACCATG 31992 ||||| ||| |||| ||| | || ||||| | |||||||| | ||||| ||| Sbjct 26022 CTCCTCGCCGT-GGCAGTCGCTGAGGCCGGGCGTCGTGTTGGGGTCCATGAGCGTCCACT 26080 Query 31993 CGACATCGGCCTCTACTCGCTTCATGAACAGGTCGTTCAGCCACATCGCGTAAAACAGAT 32052 | | || || || ||||||||||| ||||| | ||| | |||||| || || | Sbjct 26081 TGCCCTCACTCTTCACGCGCTTCATGAAGAGGTCCGGGATCCAGAGCGCGTAGAAGAGGT 26140 Query 32053 TCCTGGCGCGTTGGGTCTCCTCACCCTGGTTACGTCGGAGCAGCAGGAAGTCCATGATGT 32112 | ||||| ||| ||||| || ||| || | |||||||| || | ||||| Sbjct 26141 CGCGCGCGCGCTGGTCCTCCTTGCCAGTGTTGCGCTTCATGAGCAGGAACTCGAAGATGT 26200 Query 32113 CGGGGTGGTGGGGCTCGAGGTACACGGCGAAAGATCCCTTGCG 32155 ||| ||| ||||||||||||| |||||| | |||||||| Sbjct 26201 CGGCGTGCCACGGCTCGAGGTACATGGCGAAGGCGCCCTTGCG 26243 >seq583 Length=11976 Score = 89.7 bits (98), Expect = 9e-13 Identities = 124/174 (71%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 173102 ATTGACACGATTATGCACTTTGCTGCGCAGACCCATGTGGACAACTCGTTCGGTAACTCG 173161 ||||||||| | | |||||||| ||||||| ||| || |||||| || || ||| Sbjct 1907 ATTGACACGGTGGTCCACTTTGCGGCGCAGAGCCACGTCGACAACAGCTTTGGCAACAGC 1848 Query 173162 CTGGCATTTACCATGAACAACGTCTACGGGACCCACGTTCTCCTGGAATGCGCGAGGCTC 173221 ||| | || || ||||||||||| ||||| || ||| || |||| |||||| || || Sbjct 1847 CTGTCCTTCACGATGAACAACGTGTACGGCACGCACAACCTGTTGGAGTGCGCGCGGGTC 1788 Query 173222 TATGGCGGTGTCCAGCGGTTCATCAATGTGTCTACCGACGAAGTATACGGCGAG 173275 || | | | || ||||||| | || || ||||| || ||||||||| Sbjct 1787 TACAACCGCTTGGAGAAGTTCATCCACGTCAGCACGGACGAGGTCTACGGCGAG 1734 >seq126 Length=38165 Score = 87.8 bits (96), Expect = 3e-12 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 84463 TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCAC 84520 |||||||||||| |||||||| ||||||||||| ||||||||||||||||| |||||| Sbjct 14441 TAGCTCAGTCGGTAGAGCGCACGGCTCTTAACCGTGTGGTCGTGGGTTCGATCCCCAC 14498 >seq40 Length=58441 Score = 87.8 bits (96), Expect = 3e-12 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 84463 TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCAC 84520 |||||||||||| |||||||| ||||||||||| ||||||||||||||||| |||||| Sbjct 29156 TAGCTCAGTCGGTAGAGCGCACGGCTCTTAACCGTGTGGTCGTGGGTTCGATCCCCAC 29213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921587816119440