Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20culicis_20[genbank_20GCA_5F000482145.1_202013-10-25] 3,002 sequences; 23,587,153 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq2 466 3e-126 seq1609 428 8e-115 seq866 246 6e-60 seq224 89.7 1e-12 >seq2 Length=121565 Score = 466 bits (516), Expect = 3e-126 Identities = 1163/1734 (67%), Gaps = 84/1734 (5%) Strand=Plus/Plus Query 243735 CCACGCTGAACTGGACGG-GTGCGACGGCGGCCTTGGTCCTCAGGTAGTACATGCCGGTC 243793 ||||| |||||| || || || || |||||| ||| | |||||||||||||| ||| Sbjct 24857 CCACGGTGAACTTGATGGCGTCCG-CGGCGGGGCGGGTGCGGAGGTAGTACATGCCCGTC 24915 Query 243794 TTGAGTCC--ACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGCTTCTTCATCTTGAGCT 243851 ||||| || ||| |||| ||||| |||||||| ||| | || | ||| Sbjct 24916 TTGAGCCCGGACTT--CCAGCAGTGGAAGTGCATGGACGTGATCTGA-----CCGGAGGA 24968 Query 243852 TTGGGTCGTCCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCC 243911 || || || ||| || | ||| | |||||| ||| || | | | | | Sbjct 24969 GGGGCTC----TC---CAGGAACAAGTTCATGGACTGCGACTGATCAATGTACTTGCCGC 25021 Query 243912 GCTCTGCGGCCATGGTGATGAGGTCCTTCTGAGATATCTCATACGCCGTCTTGTAGATGG 243971 || | ||||||||| ||||||| ||| || ||||| | | || ||||| Sbjct 25022 GCGCGGCGGCCATGTCGATGAGGGTGCGCTGCGAGATCTCCCAGACGGTGCGGTAGA--- 25078 Query 243972 GCTTG---AGGTGCTCGGGGAAC-CCTTCGATGTTCTGCACCGAGCCCTTGTGGACGATG 244027 ||| | |||| | |||||| || || | |||||||||||| || ||| | |||| Sbjct 25079 GCTCGCGCAGGTCCGCGGGGATGTCCATC-ACGTTCTGCACCGACCCGTTGAAGGTGATG 25137 Query 244028 AGCTGGGTGCGCATGTTATCGTTCCACAGGCCCAAGCGCTCCA---GCGCCTCGACCAGG 244084 | || | |||| || || ||| |||||||||| ||||| | | || || ||| Sbjct 25138 ATCTCGTTGCGGATCTTGTCGCTCCACAGGCC---GCGCTGAATGAGGTCCATCACGAGG 25194 Query 244085 TGCCTGTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTG 244144 | | ||||||| || | ||||| || ||||||||||||| ||||| |||| | || Sbjct 25195 TACTTGTTCACAACGGGGAACTCGCCGCTCAGCACGCGGCGCACGTAGATGTTGGAGGTG 25254 Query 244145 AGCGGCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGC 244204 | ||||||| || ||| |||||||||| ||||||| |||| || |||||||| ||| Sbjct 25255 AAGGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGCGACGTGGAGGCGGTCGGCATCGGC 25314 Query 244205 GACACCAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTG--AGCTCGTTCC 244262 | | ||||| ||| | || ||| | | || ||| ||| || || || Sbjct 25315 GCGAGGAGCAGCGAGTTGCGCATGCCAACCTCCACGACGCGCT-TCTTCAAGGCCGC-CC 25372 Query 244263 AGTCCCACATGCCCGAGAGGTCCTCG-CGTTTGAGGCC--CCACATGTCAAACTGCAGCA 244319 ||||||| ||| | || ||| ||| | || ||||| ||| |||||||||| Sbjct 25373 AGTCCCAGCGGCC-----GCTCTTCGGCGTCT----CCTTCCACAGGTCGAACTGCAGCA 25423 Query 244320 GCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCT 244379 ||||||| |||||||||||| | | ||| |||||| || || | ||||| | Sbjct 25424 GCCCCTTCGACGCGGGGCTGCCCTGGAACGTCTCGTAGGGGCCCTCCACCGCCGCCAGGT 25483 Query 244380 T-ACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCG 244438 || | | || | ||| |||||||||||||||||||||| || ||| | | || Sbjct 25484 CCACGGAGGAC-TCCACCGCGCCGTAGTAGATGGTCTCGAAGATGTCCTCGTTGAGG-CG 25541 Query 244439 CGG-GCCTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTG 244497 | | |||| || ||||||| || | | || |||| |||| || || ||||| Sbjct 25542 CTGCGCCTCCGGGCTCGTGAAGGAGAGCCGGAGCAGGCAGAAGGCGTCTGCGAGGCCCTG 25601 Query 244498 CACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCT-TCGGGCACGGGGT 244556 |||||||| ||||||||| | ||| ||| ||||| |||| ||| || | ||||||| Sbjct 25602 CACGCCGAGGCCGATGGGGCGGTGGCGCATGTTGCTGCGCTCGGCGGTCTCG-ACGGGGT 25660 Query 244557 AAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACG--ACGTCGGC 244614 | |||| | ||| || || |||||||||| ||||||| | || || || Sbjct 25661 AGTAGTTTCGGTCTATGACACGGTTGAGGTTGTAGGTGATCT--CCTTCGTCACCTCATA 25718 Query 244615 CAGCAGCTGAAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTT 244674 ||| |||| ||| |||||| | |||| ||| ||||||||| | Sbjct 25719 GAGCCGCTGGTGGTCAAACTCGTTC---TTCTCGC----GGT-----TCACAAACTTGGA 25766 Query 244675 GAGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAAT 244734 || |||| |||||||||||| || ||| ||| ||| |||||||| || || Sbjct 25767 CAGCGCGATCGAGGCCAGGTTGCACACCGCCGTCTCGTCCTTCGAGGTGTACTCGATGAT 25826 Query 244735 CTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTT 244794 ||| ||||| |||||| ||||||||||||||| |||| ||| || || ||||||||||| Sbjct 25827 CTCCGTGCACAGGTTAGAGCACTTGATGGTGCCGAGGTTCTGCTGGTTCGACTTGGCGTT 25886 Query 244795 GCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCT 244854 |||||| ||||||||||||||||| ||| | || || |||| ||| | | || | | Sbjct 25887 GCAGGCATCCTTGTAGAGCATGAACGGCACGCCCGTTTCGATCTGAGACTCCAGAATGGC 25946 Query 244855 GTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGT 244914 ||| || ||| |||| ||| || | | || | |||| || ||||| | Sbjct 25947 AAACCACAGCTCCTGCGCCTGGACGGTGCGGATGCCCATACCCTTCGCTTCGTACCCCTC 26006 Query 244915 GTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCA 244974 ||| || ||||||||| ||| | ||| |||||||| || ||| Sbjct 26007 GTAGAGCTTCTCGAACTCCTCGCCGTGGCAGTCGCTGAGGCCGGGCGTCGTGTTGGGGTC 26066 Query 244975 CATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAG 245034 |||||| |||||| ||| | ||| || | || |||||||||||| ||||||||||| Sbjct 26067 CATGAGCGTCCACTTGCCCTCACTCTTCACGCGCTTCATGAAGAGGTCCGGGATCCAGAG 26126 Query 245035 GGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTT---CTTCCTCAGCTC 245091 || | ||||||||| | | | ||| || ||| ||||||||| |||| | || Sbjct 26127 CGCGTAGAAGAGGTCGCGCGCGCGCTGGTCCTCCTTGCCAGTGTTGCGCTTCATGAG--- 26183 Query 245092 CAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCG 245151 || || || |||| |||| ||||||| ||||| | ||| | |||| |||||| || Sbjct 26184 CAGGAACTCGAAGATGTCGGCGTGCCACGGCTCGAGGTACATGGCGAAGGCGCCCTTGCG 26243 Query 245152 CTTGTTGCCTCCCTGGTCCACCATCCTCTCGAG-CGCGTTG---AAGATGCGCAGGGTAG 245207 ||| ||| ||||| | || | | || | || |||| | | ||| | | | Sbjct 26244 CTTACCGCCGCCCTG----ATCAACGTAGCGGGCCGTGTTGTTCCACACGCGGATCATCG 26299 Query 245208 GCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGT 245267 ||| | |||||| || ||||||||||||| ||||||| ||| | | || || Sbjct 26300 GCATGAGGCCGTTCGACGTGCCGTTGGTGCCCGCGATGTAGCTGCCGGCCGCGCGGATGT 26359 Query 245268 TGCTGATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGG 245327 || ||| ||||| | ||||| || |||| ||| | |||||| ||| | | Sbjct 26360 TGTGGATATGGATGCCAATGCCGCCAGCCGCCTTGCTGATCACGGCGCACTCCTTCAGCG 26419 Query 245328 TGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCT 245387 |||| |||||||| |||||||| |||||| || ||| ||||| ||| || || Sbjct 26420 TGTCGTAGATGCCCTCGATGCTGTCGTCCTTCATCGCGACCAGGAAGCACGAGCTCATCT 26479 Query 245388 GGGGCTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGC 245441 | ||||||||| | | | |||||| || |||||| ||||||| || ||| ||| Sbjct 26480 GCGGCTTGGGGGTACCGGCGTTGAAGAGCGTGGGGGTGGCGTGCGTGAAGAAGC 26533 >seq1609 Length=2085 Score = 428 bits (474), Expect = 8e-115 Identities = 621/866 (72%), Gaps = 13/866 (2%) Strand=Plus/Plus Query 42285 ATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCC 42344 ||| || ||| ||||||||| || ||||||| || | || || || |||||| Sbjct 729 ATCCAGTTCCACGACATCTGGCGCAAGTACAAGGAGCAGGAGAGCTGCATCTGGACGCTG 788 Query 42345 GAGGAGATTGACCTGGCCAAGGACACGGCCGGCTGGGAGTCA--CTGTCTGAGAACGAAA 42402 |||||||| ||||| | || ||| |||| ||||| ||| ||| ||| ||| Sbjct 789 GAGGAGATCGACCTCGGCAGCGACCTCGCCGACTGGG--TCAAGCTGAGCGAGGGCGAGC 846 Query 42403 AGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGA 42462 || ||| |||| || | |||||||||||||||| | |||||||| ||| |||| Sbjct 847 AGCACTTCATCAAGCACGTGCTGGCCTTCTTCGCCGGCAGCGACGGCATCGTCGTCGAGA 906 Query 42463 ACCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCT 42522 |||| || | |||||| || || || ||||||||| ||||||||||| Sbjct 907 ACCTCGCGGTGCGCTTCATGTCCGACGTCAAGGTGCCCGAGGCGCGCGCCTTCTACGGCT 966 Query 42523 TCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACA 42582 ||||| | || |||||| | ||||| ||| |||| | |||||| |||| |||| Sbjct 967 TCCAGCTCATGATGGAGAACATCCACTCCGAGACGTACTCGGTGCTGCTCGACACCTACA 1026 Query 42583 TCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCA 42642 || ||| || ||| | ||| | | ||||| |||| || ||||||||| Sbjct 1027 TCACGGACAGCGCGGAGAAGCTGCGCCTGCTGCACGCCATCCAGACCATCCCCTGCATCC 1086 Query 42643 AGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGA 42702 |||||||||| ||||||| | |||||||| || || ||| | ||| ||| Sbjct 1087 AGAAGAAGGCCAACTGGGCCGTGCGCTGGATCGGCAG---CGCCGCCAGCTTCCAGGAGC 1143 Query 42703 GGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCT 42762 |||| | | ||| | ||||||||||||||||||||||| ||| ||||| |||||||| Sbjct 1144 GGCTCATCGGCTTCGCGGCCGTCGAGGGCATCTTCTTCTCCGGCTCCTTCTGCTCCATCT 1203 Query 42763 TCTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGC 42821 ||||||||||| || || || ||||||||| ||||||||| ||||| |||||| Sbjct 1204 TCTGGCTCAAGAAGCGCGGCGT-GATGCCCGGCCTCACCTTCAGCAACGAGCTCATCTCG 1262 Query 42822 AGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCAC 42881 | |||||||| ||||| | ||||| |||||||| |||| | |||||| ||| ||| Sbjct 1263 CGCGACGAGGGCCTGCACACCGACTTCGCCTGCCTGCTGTACAACAGCCACATCAAACAC 1322 Query 42882 AAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAG 42941 |||| || ||||| || | || ||||||||| || ||||| | |||||||||||| Sbjct 1323 AAGCTGCCGCGCGAGCGCGTGCTGGACATCATCACCGACGCCGTCGTCATCGAGAAGGAG 1382 Query 42942 TTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAG 43001 ||| || | ||||||||||| ||| ||||||||||| |||||||||| || || Sbjct 1383 TTCATCTGCGACGCGCTGCCCGTGCGCCTCATCGGCATGAACGCCGACCTCATGAGCCAG 1442 Query 43002 TACATCCAGTACGTCGCCGACCATCTCCT-GTGCCAGATGGGTCT-CAGCCGCCTCTACA 43059 |||||| ||| |||||| |||| || || ||| | | |||| || || | | ||||| Sbjct 1443 TACATCGAGTTCGTCGCGGACCGCCTGCTCGTGTC-GCTGGGCCTGGAGAAG-CACTACA 1500 Query 43060 ACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTT 43119 || | | |||||||||||| ||||||| ||||| | |||||||||||||| | Sbjct 1501 ACTCCACCAACCCCTTCGACTTCATGGAGATGATCTCCCTCACCGGCAAGACCAACTTCT 1560 Query 43120 TCGAGAAGCGCGTCGCCGACTACCAG 43145 |||||||| |||||||| |||||| Sbjct 1561 TCGAGAAGAAGGTCGCCGAGTACCAG 1586 >seq866 Length=6634 Score = 246 bits (272), Expect = 6e-60 Identities = 292/388 (75%), Gaps = 6/388 (2%) Strand=Plus/Plus Query 42761 CTTCTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCA 42819 ||||||||||||| || || || ||||||||| ||||||||| ||||| |||||| Sbjct 1 CTTCTGGCTCAAGAAGCGCGGCGT-GATGCCCGGCCTCACCTTCAGCAACGAGCTCATCT 59 Query 42820 GCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGC 42879 | |||||||| ||||| | ||||| |||||||| |||| | ||| || ||| || Sbjct 60 CGCGCGACGAGGGCCTGCACACCGACTTCGCCTGCCTGCTGTACAACAGCTACATCAAGC 119 Query 42880 ACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGG 42939 |||||| || ||||| || | || ||||||||| || ||||| | |||||||||| Sbjct 120 ACAAGCTGCCGCGCGAGCGCGTGCTGGACATCATCACCGACGCCGTCGTCATCGAGAAGG 179 Query 42940 AGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCA 42999 ||||| || | ||||||||||| ||| ||||||||||| |||||||||| || Sbjct 180 AGTTCATCTGCGACGCGCTGCCCGTGCGCCTCATCGGCATGAACGCCGACCTCATGAGCC 239 Query 43000 AGTACATCCAGTACGTCGCCGACCATCTCCT-GTGCCAGATGGGTCT-CAGCCGCCTCTA 43057 |||||||| ||| |||||| |||| || || ||| | | |||| || || | | ||| Sbjct 240 AGTACATCGAGTTCGTCGCGGACCGCCTGCTCGTGTC-GCTGGGCCTGGAGAAG-CACTA 297 Query 43058 CAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTT 43117 |||| | | |||||||||||| ||||||| ||||| | |||||||||||||| Sbjct 298 CAACTCCACCAACCCCTTCGACTTCATGGAGATGATCTCCCTCACCGGCAAGACCAACTT 357 Query 43118 TTTCGAGAAGCGCGTCGCCGACTACCAG 43145 ||||||||| |||||||| |||||| Sbjct 358 CTTCGAGAAGAAGGTCGCCGAGTACCAG 385 >seq224 Length=27088 Score = 89.7 bits (98), Expect = 1e-12 Identities = 133/186 (72%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 96107 TCGACGAGGGACAGTTCTTCCCCGACCTCTACGAGGG-AGTCGTGCAGCTGCTGACCGCG 96165 |||||||||| ||||||||| |||| | | | ||||| | || || ||||||| Sbjct 14149 TCGACGAGGGGCAGTTCTTCGACGACGTGGTCACGTTCAGTCGCGTCGCGGCGGACCGCG 14090 Query 96166 GGCAAGTACGTGATCGTGGCGGCGCTGGACGGGGACTTTATGCAGCAGCCCTTCAAGCAG 96225 | || | |||||| | |||||||| ||||| |||||| ||| || |||||||| || Sbjct 14089 GCAAAATT-GTGATCATCGCGGCGCTCGACGGCGACTTTCTGCGGCGGCCCTTCACCCAC 14031 Query 96226 GTGACGGCGTTGGTGCCCATGGCGGACAAGCTGGACAAGCTGACGGCGGTGTGCATGAAG 96285 | ||| | | | || || || ||| | || ||||||||||| ||||||||| | Sbjct 14030 ATCGCGGAGCTCATTCCGCTGAGCGAGAAGGTCGATAAGCTGACGGCCGTGTGCATGCTG 13971 Query 96286 TGCAAG 96291 ||| || Sbjct 13970 TGCCAG 13965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944303763671520