Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20culicis_20[genbank_20GCA_5F000482145.1_202013-10-25] 3,002 sequences; 23,587,153 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq1609 143 6e-29 seq866 129 1e-24 >seq1609 Length=2085 Score = 143 bits (158), Expect = 6e-29 Identities = 292/431 (68%), Gaps = 7/431 (2%) Strand=Plus/Plus Query 243295 GAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCC 243354 ||||| ||| ||| || | | ||| || || || | || ||||| |||||| || Sbjct 1140 GAGCGGCTCATCGGCTTCGCGGCCGTCGAGGGCATCTTCTTCTCCGGCTCCTTCTGCTCC 1199 Query 243355 ATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATC 243414 ||||| ||||| ||| || |||||||| |||||| | |||||| ||||| Sbjct 1200 ATCTTCTGGCTCAAGAAGCGCGGCGTGATGCCCGGCCTCACCTTCAGCAACGAGCTCATC 1259 Query 243415 AGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAA-AGC----TCC 243469 |||||||||||||| ||| | |||| || |||| ||| ||| || Sbjct 1260 TCGCGCGACGAGGGCCTGCACACCGACTTCGCCTGCCTGCTGTA--CAACAGCCACATCA 1317 Query 243470 AGAACAAGCTACCATTCGAAACGGTCAAACAAATCATCACAGAAGCAGTTGAAAACGAAA 243529 | ||||||| || ||| || | |||||||| || || || | | ||| | Sbjct 1318 AACACAAGCTGCCGCGCGAGCGCGTGCTGGACATCATCACCGACGCCGTCGTCATCGAGA 1377 Query 243530 AGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACTCATGG 243589 |||| ||||| |||||||| | || || || || ||||||||| | || |||||| Sbjct 1378 AGGAGTTCATCTGCGACGCGCTGCCCGTGCGCCTCATCGGCATGAACGCCGACCTCATGA 1437 Query 243590 GACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAAGTGT 243649 | ||||||||||| ||||| || |||||| | || | |||| || ||||| | Sbjct 1438 GCCAGTACATCGAGTTCGTCGCGGACCGCCTGCTCGTGTCGCTGGGCCTGGAGAAGCACT 1497 Query 243650 ACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACTAACT 243709 ||||||||| |||||||| | ||| |||||| | || || || || || || |||| Sbjct 1498 ACAACTCCACCAACCCCTTCGACTTCATGGAGATGATCTCCCTCACCGGCAAGACCAACT 1557 Query 243710 TCTTCGAAAAG 243720 ||||||| ||| Sbjct 1558 TCTTCGAGAAG 1568 >seq866 Length=6634 Score = 129 bits (142), Expect = 1e-24 Identities = 240/350 (69%), Gaps = 7/350 (2%) Strand=Plus/Plus Query 243376 GGTGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGCCTTCAC 243435 || |||||||| |||||| | |||||| ||||| |||||||||||||| ||| Sbjct 20 GGCGTGATGCCCGGCCTCACCTTCAGCAACGAGCTCATCTCGCGCGACGAGGGCCTGCAC 79 Query 243436 CAACAGTTCGGTGAGCTTATGTATTCAA-AGCTCCA----GAACAAGCTACCATTCGAAA 243490 | |||| || |||| ||| |||| || | ||||||| || ||| Sbjct 80 ACCGACTTCGCCTGCCTGCTGTA--CAACAGCTACATCAAGCACAAGCTGCCGCGCGAGC 137 Query 243491 CGGTCAAACAAATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTA 243550 || | |||||||| || || || | | ||| ||||| ||||| |||||||| Sbjct 138 GCGTGCTGGACATCATCACCGACGCCGTCGTCATCGAGAAGGAGTTCATCTGCGACGCGC 197 Query 243551 TTCCATGCCGGCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAG 243610 | || || || || ||||||||| | || |||||| | ||||||||||| ||||| | Sbjct 198 TGCCCGTGCGCCTCATCGGCATGAACGCCGACCTCATGAGCCAGTACATCGAGTTCGTCG 257 Query 243611 CCGACCGCATTTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTG 243670 | |||||| | || | |||| || ||||| |||||||||| |||||||| | Sbjct 258 CGGACCGCCTGCTCGTGTCGCTGGGCCTGGAGAAGCACTACAACTCCACCAACCCCTTCG 317 Query 243671 CCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAG 243720 ||| |||||| | || || || || || || ||||||||||| ||| Sbjct 318 ACTTCATGGAGATGATCTCCCTCACCGGCAAGACCAACTTCTTCGAGAAG 367 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102837579788700