Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20culicis_20[genbank_20GCA_5F000482145.1_202013-10-25] 3,002 sequences; 23,587,153 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq2 251 9e-62 seq1609 107 2e-18 >seq2 Length=121565 Score = 251 bits (278), Expect = 9e-62 Identities = 896/1380 (65%), Gaps = 34/1380 (2%) Strand=Plus/Plus Query 113880 TGAGATCCTCCACGAGATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCA 113939 |||| ||| |||||| | ||| || ||||| ||||| || || ||| | || Sbjct 25178 TGAGGTCCATCACGAGGTACTTGTTCACAACGGGGAACTCGCCGCTCAGCACGCGGCGCA 25237 Query 113940 GATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGG 113999 ||||| |||| ||| | ||||| |||||||| ||||| |||| || || | |||| Sbjct 25238 CGTAGATGTTGGAGGTGAAGGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGCGACGTGG 25297 Query 114000 AGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTT 114059 |||| || ||||| || || | ||| || ||| || | || ||| | ||| | Sbjct 25298 AGGCGGTCGGCATCGGCGCGAGGAGCAGCGAGTTGCGCATGCCAACCTCCACGACGCGCT 25357 Query 114060 CCTTGAGGGCGTCCCAGTCGTAGTTGAG---CTTTGTCTCCCCCTGCCACATATCAAACT 114116 ||| | ||| ||||||| || | ||| | | | ||| ||||| || |||| Sbjct 25358 TCTTCAAGGCCGCCCAGTCCCAGCGGCCGCTCTTCGGCGTCTCCTTCCACAGGTCGAACT 25417 Query 114117 GGAGGATACCTTGGGAGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCCG 114176 | || | || | || || || |||| || |||||||| |||||||| ||| ||| Sbjct 25418 GCAGCAGCCCCTTCGACGCGGGGCTGCCCTGGAACGTCTCGTAGGGGCCCTCCACCGCCG 25477 Query 114177 CCAATTC---GGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCAT 114233 ||| || |||| | ||| | || ||| || || ||||| || ||| | | Sbjct 25478 CCAGGTCCACGGAG---GACTCCACCGCGCCGTAGTAGATGGTCTCGAAGATGTCCTCGT 25534 Query 114234 TCATTGCCTTGGCCTCGTCGGAATCA--AACGCGAGTCGGCACAAAATAAATACATCCGC 114291 | | || ||||| ||| || || | ||| ||| || || | || || Sbjct 25535 TGAGGCGCTGCGCCTC--CGGGCTCGTGAAGGAGAGCCGGAGCAGGCAGAAGGCGTCTGC 25592 Query 114292 GAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGA-CTTTCGAGCGGTCT 114350 ||| || || || |||||||| || ||||| || | ||| || | ||| ||||||| Sbjct 25593 GAGGCCCTGCACGCCGAGGCCGATGGGGCGGTGGCGCATGTTGCTGCGCTCG-GCGGTCT 25651 Query 114351 CCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGA 114410 | ||||| || | || | || || || | || || || | ||||| |||| || | Sbjct 25652 CGACGGGGTAGTAGTTTCGGTCTATGACACGGTTGAGGTTGTAGGTGATCTCCTTCGTCA 25711 Query 114411 TTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGG 114470 |||| ||| | || ||||| | |||| || ||| |||| | || | Sbjct 25712 CCTCATAGAGCCGCTGGTGGTCAAACTCGTTCTTCTCGCGGTTCACAAACTTGGACAGCG 25771 Query 114471 CGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCG 114530 |||| || ||||| || ||||| | ||||| ||||| |||||||| || || |||| Sbjct 25772 CGATCGAGGCCAGGTTGCACACCGCCGTCTCGTCCTTCGAGGTGTACTCGATGATCTCCG 25831 Query 114531 TACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACG 114590 | |||| || || | ||| |||||||| | ||||| || || ||||| | ||| || | Sbjct 25832 TGCACAGGTTAGAGCACTTGATGGTGCCGAGGTTCTGCTGGTTCGACTTGGCGTTGCAGG 25891 Query 114591 CATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCC 114650 |||||||||| |||||| | ||| ||||| || | || |||| ||||| || || Sbjct 25892 CATCCTTGTAGAGCATGAACGGCACGCCCGTTTCGATCTGAGACTCCAGAATGGCAAACC 25951 Query 114651 AGA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAG 114709 | | | | ||| |||| || ||| | || | |||| | | |||||| |||| Sbjct 25952 ACAGCTCCTGCGCCTGG-ACGGTGCGGATGCCCATACCCTTCGCTTCGTACCCCTCGTAG 26010 Query 114710 AGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAG 114769 || || ||||| || || | || ||| || || | | | | ||| | | Sbjct 26011 AGCTTCTCGAACTCCTCGCCGTGGCAGTCGCTGAGGCCGGGCGTCGTGTTGGGGTCCATG 26070 Query 114770 AGAGACCA-TTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAGAGC 114828 || | ||| ||| || | ||| || || ||||||||||||||||| ||||||||||| || Sbjct 26071 AGCGTCCACTTGCCCTCACTCTTC-ACGCGCTTCATGAAGAGGTCCGGGATCCAGAGCGC 26129 Query 114829 TGAGAAGAGATCCCGACAGCG-AGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAA 114887 ||||||| || || ||| | | || | | || || ||| | || || | Sbjct 26130 GTAGAAGAGGTCGCGCGCGCGCTGGTCCTCCTTGCCAGTG-TTGCGCTTCATGAGCAGGA 26188 Query 114888 AGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACG---AC 114944 | || | ||| || ||||||||||| || ||||||| |||| | ||||| || || Sbjct 26189 ACTCGAAGATGTCGGCGTGCCACGGCTCGAGGTACATGGCGAAGGCGCCCTTGCGCTTAC 26248 Query 114945 GACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAATGATAC 115004 || |||| | || || | || ||| || | ||||| | ||| || |||| | Sbjct 26249 CGCCGCCCTGATCAACGTAGCGGGCCGTGTTGTTCCACACGCGGATCATCGGCATGAGGC 26308 Query 115005 CATCAGATTGGCCATTTGT-CCCCCGA-ATACGAGACTTATTGGCTCTGACATCATGGAT 115062 | | || ||| || || ||| ||| || | | || | || | ||||| Sbjct 26309 CGTTCGACGTGCCGTTGGTGCCCGCGATGTAGCTGCC--GGCCGCGCGGATGTTGTGGAT 26366 Query 115063 GTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTA 115122 || || ||||| || || ||| ||| ||| ||||||||| | || || |||| Sbjct 26367 ATGGATGCCAATGCCGCCAGCCGCCTTGCTGATCACGGCGCACTCCTTCAGCGTGTCGTA 26426 Query 115123 GATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGC---AGCTCGACATTTGTGG 115179 ||| || ||||| ||| |||| | |||| ||||||| |||| ||| || || Sbjct 26427 GATGCCCTCGATGCTGTCGTCCTTCATCGCGACCAGGAAGCACGAGCT---CATCTGCGG 26483 Query 115180 CCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTGGGACAT 115239 | | || ||||| ||||||||||| || || || ||||| |||| | || || ||||| Sbjct 26484 CTTGGGGGTACCGGCGTTGAAGAGCGTGGGGGTGGCGTGCGTGAAGAAGCCCTGCGACAT 26543 >seq1609 Length=2085 Score = 107 bits (118), Expect = 2e-18 Identities = 336/512 (66%), Gaps = 10/512 (2%) Strand=Plus/Minus Query 125773 CTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATAAAATCAAATGGGTT 125832 ||||||||||||||| ||||| ||| | | ||| ||||||| || || || ||||| Sbjct 1568 CTTCTCGAAGAAGTTGGTCTTGCCGGTGAGGGAGATCATCTCCATGAAGTCGAAGGGGTT 1509 Query 125833 CTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAGGAGACGATCCGAGACGTACTC 125892 | ||||| | | || || | | ||| || || |||| |||| |||| Sbjct 1508 GGTGGAGTTGTAGTGCTTCTCCAGGCCCAGCGACACGAGCAGGCGGTCCGCGACGAACTC 1449 Query 125893 AATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTACATGGG-AGCGCGTCCA 125951 ||||||| ||| || | |||||| ||||||||| || ||| |||||||| Sbjct 1448 GATGTACTGGCTCATGAGGTCGGCGTTCATGCCGATGAGGCG-CACGGGCAGCGCGTCGC 1390 Query 125952 AGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGCGTGAATGGTGTC-CACC 126010 |||||||| ||||||| || | ||||| || | |||| | | | | || | | Sbjct 1389 AGATGAACTCCTTCTCGATGACGACGGCGTCGGTGATGATGTCCAGCACGCGCTCGCGCG 1330 Query 126011 CCAG---GTCTATTGCGCAAAGTCTTGAAGAGTTCCACGGCAAACTCTTGGTGGAGACCC 126067 ||| || | ||| | ||| | || ||| || || ||| || ||| Sbjct 1329 GCAGCTTGTGT-TTGATGTGGCTGTTGTACAGCAGGCAGGCGAAGTCGGTGTGCAGGCCC 1271 Query 126068 TCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTCTTC 126127 ||||| || |||||||| || || |||| || || ||||| | || |||||||| Sbjct 1270 TCGTCGCGCGAGATGAGCTCGTTGCTGAAGGTGAGGCCGGGCATCACGCCGCGCTTCTTG 1211 Query 126128 AACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACACGCGAACGCA 126187 | |||||| || | || || || || ||||||||||| ||||| || |||||| | Sbjct 1210 AGCCAGAAGATGGAGCAGAAGGAGCCGGAGAAGAAGATGCCCTCGACGGCCGCGAAGCCG 1151 Query 126188 AAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACCACTTCATCGCCCACTGCGCC 126247 | ||| ||||| ||| | ||| | || | | ||| || ||||| | ||| Sbjct 1150 ATGAGCCGCTCCTGGAAGCTG-GCGGC--GCTGCCGATCCAGCGCACGGCCCAGTTGGCC 1094 Query 126248 TTTTTCTCGATACACGGGACGGTCTGGATCGC 126279 || |||| ||| || |||| ||||||||| || Sbjct 1093 TTCTTCTGGATGCAGGGGATGGTCTGGATGGC 1062 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597331184306160