Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20culicis_20[genbank_20GCA_5F000482145.1_202013-10-25] 3,002 sequences; 23,587,153 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq2 251 7e-62 >seq2 Length=121565 Score = 251 bits (278), Expect = 7e-62 Identities = 993/1534 (65%), Gaps = 55/1534 (4%) Strand=Plus/Minus Query 93892 GCCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTG 93951 |||||||| || || |||||||| || ||||| ||| |||||| ||||| |||||| Sbjct 26519 GCCACCCCCACGCTCTTCAACGCCGGTACCCCCAAGCCGCAGATGAGCTCGTGCTTCCTG 26460 Query 93952 ATGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACC 94011 | ||| |||| |||| |||| || || | ||||| || ||||| || || Sbjct 26459 GTCGCGATGAAGGACGACAGCATCGAGGGCATCTACGACACGCTGAAGGAGTGCGCCGTG 26400 Query 94012 ATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCC 94071 ||| || || || || || || ||| | ||||| || | || || || | Sbjct 26399 ATCAGCAAGGCGGCTGGCGGCATTGGCATCCATATCCACAACATCCGCGCGGCCGGCAGC 26340 Query 94072 TACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAAC 94131 |||||| || ||||| ||||| || ||||||||| | || ||| |||| || | ||| Sbjct 26339 TACATCGCGGGCACCAACGGCACGTCGAACGGCCTCATGCCGATGATCCGCGTGTGGAAC 26280 Query 94132 AACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTAT 94191 ||| |||| |||||||| || ||||| || || | | | ||||| | ||||| | || Sbjct 26279 AACACGGCCCGCTACGTTGATCAGGGCGGCGGTAAGCGCAAGGGCGCCTTCGCCATGTAC 26220 Query 94192 CTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCAC-GGCAA 94250 |||||||| |||||||| ||| | | ||| | | || | | | ||| ||||| Sbjct 26219 CTCGAGCCGTGGCACGCCGACATCTTCGAGTTCCTGCTCATGA-AGCGCAACACTGGCAA 26161 Query 94251 CGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAA 94310 || || | || | |||||||||||||| |||||| | || ||||| || ||||| Sbjct 26160 GGAGGACCAGCGCGCGCGCGACCTCTTCTACGCGCTCTGGATCCCGGACCTCTTCATGAA 26101 Query 94311 ACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTC 94370 ||||| ||| | | |||| || | ||||| ||||| || Sbjct 26100 GCGCGTGAAGAGTGAGGGCAAGTGGACGCTCATGGACCCCAACACGACGCCCGGCCTCAG 26041 Query 94371 CGACGTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAGGC 94430 |||| || | || || | | || | | |||||| || |||| | || Sbjct 26040 CGACTGCCACGGCGAGGAGTTCGAGAAGCTCTACGAGGGGTACGAAGCGAAGGGTATGGG 25981 Query 94431 CA---GGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGA 94487 || | | || || || |||| ||||||| | || |||| ||| | || Sbjct 25980 CATCCGCACCGTCCAGGC-GC-AGGA-GCTGTGGTTTGCCATTCTGGAGTCTCAGATCGA 25924 Query 94488 GACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCA 94547 ||||| ||| | ||| | | |||||| | |||||||||||| ||||||||| | Sbjct 25923 AACGGGCGTGCCGTTCATGCTCTACAAGGATGCCTGCAACGCCAAGTCGAACCAGCAGAA 25864 Query 94548 CCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGA 94607 |||||| |||||| |||| || |||||||| ||||| ||||||| || || ||| Sbjct 25863 CCTCGGCACCATCAAGTGCTCTAACCTGTGCACGGAGATCATCGAGTACACCTCGAAGGA 25804 Query 94608 CGAGATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTG-----CGAGAT 94662 ||||| || ||||| ||||||| ||| ||| ||||||| || ||| ||||| Sbjct 25803 CGAGACGGCGGTGTGCAACCTGGCCTCGATCGCGCTGTCCAAGTTTGTGAACCGCGAGAA 25744 Query 94663 GCCTACACGTCT-ACTGCTTCGTTCGATCTGGAGGAGCTTGTGAACTTCGCGGGAAGGAT 94721 | || || | || | | | ||| | ||| |||| || ||| ||| Sbjct 25743 GA--ACGAGTTTGACCAC--CAGCGGCTCT--ATGAG---GTGA----CGAAGGA--GAT 25699 Query 94722 GGTCTTGAACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAA 94781 || ||||| ||| | || || ||| |||| |||||||||| | || ||| Sbjct 25698 CACCTACAACCTCAACCGTGTCATAGACCGAAACTACTACCCCGTCGAGACCGCCGAGCG 25639 Query 94782 CTCAAACCTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGT 94841 | ||| || || || ||||||||| ||||||| ||||| |||| ||||| || | Sbjct 25638 CAGCAACATGCGCCACCGCCCCATCGGCCTCGGCGTGCAGGGCCTCGCAGACGC-CTTCT 25580 Query 94842 GA-TGATGCGTCTGCCCT--ACGACTCTGTCGACGCGGCGGGTTTGAATTTGAACATATT 94898 | || | || || ||| |||| | | | ||| ||| | || | |||| || Sbjct 25579 GCCTGCTCCGGCTCTCCTTCACGAGCCCGGAGGCGCAGCGCCTC--AACGAGGACATCTT 25522 Query 94899 CGAAAGCATTTATTACGGGGCCATGAAACAATCCGTCCACTTGGCCAGATCGGACGGCGG 94958 ||| | ||| || ||||| || || | ||||| || |||| ||| || || Sbjct 25521 CGAGACCATCTACTACGGCGCGGTGGAGTCCTCCGTGGACCTGGCGG---CGGT-GGAGG 25466 Query 94959 GCCAC-ACGAATCGTTCCGCGG-ATCGCC-CTTGGAACAGGGCATTTTTCAGTTCGACCT 95015 ||| | |||| |||||| || | | || | | ||| |||| | | ||||||||||| Sbjct 25465 GCCCCTACGAGACGTTCCAGGGCAGCCCCGCGTCGAAG-GGGC-TGCTGCAGTTCGACCT 25408 Query 95016 CTGGGGTGTGAAGCCCTCG---GGTCTGTACGACTGGGAAGCTCT----ACGCGCTGATG 95068 ||| | || ||| | || | | ||||||| || | | |||| | Sbjct 25407 GTGGAAGGAGACGCCGAAGAGCGGCCGCTGGGACTGGGCGGCCTTGAAGAAGCGC----G 25352 Query 95069 TTATCAAACACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGG 95128 | | | || || ||| ||||||| | || || ||||| || ||||||||| Sbjct 25351 TCGTGGAGGTTGGCATGCGCAACTCGCTGCTCCTCGCGCCGATGCCGACCGCCTCCACGT 25292 Query 95129 CGCAGATCCTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGC 95188 ||||||| || ||||||||||||| ||||| ||||||||||||||| | ||| | | Sbjct 25291 CGCAGATTCTGGGCAACAACGAGTGCTTCGAGCCCTTCACCTCCAACATCTACGTGCGCC 25232 Query 95189 GGGTGCTCGCCGGGGAATTCCCCGTCATCAACAAGCACCTCCTACGGGACCTGACGTCTC 95248 | ||||| ||| || |||||||| | |||||| ||||| | |||||| | | Sbjct 25231 GCGTGCTGAGCGGCGAGTTCCCCGTTGTGAACAAGTACCTCGTGATGGACCTCATTCAGC 25172 Query 95249 TGGGTGTGTGGGGTGACAAGGTCAAGAACCAACTGCTACGCGCCAACGGCTCCGTCCAGA 95308 || ||||| | |||||| || ||| | | | | |||||| || || |||| Sbjct 25171 GCGGCCTGTGGAGCGACAAGATCCGCAACGAGATCATCACCTTCAACGGGTCGGTGCAGA 25112 Query 95309 ACATCCCGCAAATACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGC 95368 || | | | || || | |||| | | ||||||| ||||| ||||||||| ||| Sbjct 25111 ACGTGATGGACATCCCCGCGGACCTGCGCGAGCTCTACCGCACCGTCTGGGAGATCTCGC 25052 Query 95369 AGCGCGTGATACTCGACCACGCGGCCGCCCGCGG 95402 ||||| | ||||| || ||||| ||||| Sbjct 25051 AGCGCACCCTCATCGACATGGCCGCCGCGCGCGG 25018 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494704635511920