Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20culicis_20[genbank_20GCA_5F000482145.1_202013-10-25] 3,002 sequences; 23,587,153 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq1609 172 5e-38 seq866 165 8e-36 seq36 132 5e-26 seq455 122 8e-23 seq257 120 3e-22 seq2 120 3e-22 seq782 118 1e-21 seq2803 114 1e-20 >seq1609 Length=2085 Score = 172 bits (190), Expect = 5e-38 Identities = 305/437 (70%), Gaps = 6/437 (1%) Strand=Plus/Plus Query 47145 ATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTT-TGCGGCGATATTTTA 47203 |||| ||||| |||||||||| |||||||||| ||| ||| ||| | || || | Sbjct 1149 ATCGGCTTCGCGGCCGTCGAGGGCATCTTCTTCTCCGGCTCCTTCTGCTCC-ATCTTCTG 1207 Query 47204 CATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAGA 47263 | || | || || |||||||||||||| || ||||||||||| |||||| | || Sbjct 1208 GCTCAAGAAGCGCGGCGTGATGCCCGGCCTCACCTTCAGCAACGAGCTCATCTCGCGCGA 1267 Query 47264 CGAAGGCCTGCACACCAACTTTGCCTGTCTCTACTACAACA-CTAGAGTCGATCAAAAGT 47322 ||| |||||||||||| |||| ||||| || ||||||| | | | || | || ||| Sbjct 1268 CGAGGGCCTGCACACCGACTTCGCCTGCCTGCTGTACAACAGCCACA-TCAAACACAAGC 1326 Query 47323 TGGACGTGCCCAC-CGTCAGCGACATGTTTGCCGAAGCCGTCGCCATTGAGATGGAGTTT 47381 | | || || | ||| ||||| | |||| ||||||| ||| |||| |||||| Sbjct 1327 T-GCCGCGCGAGCGCGTGCTGGACATCATCACCGACGCCGTCGTCATCGAGAAGGAGTTC 1385 Query 47382 TTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAACGCGGAGATGATGAGAAAGTAC 47441 || ||| || ||||||| | | || |||||||| || | ||||| ||||| Sbjct 1386 ATCTGCGACGCGCTGCCCGTGCGCCTCATCGGCATGAACGCCGACCTCATGAGCCAGTAC 1445 Query 47442 ATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGTATCCCAAGATTTACCACACC 47501 ||||| || ||||| |||||||||||||| ||| ||| ||| || || Sbjct 1446 ATCGAGTTCGTCGCGGACCGCCTGCTCGTGTCGCTGGGCCTGGAGAAGCACTACAACTCC 1505 Query 47502 GAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTTCGAG 47561 || || ||||| || ||| | | || || ||| |||||||||||||| |||||| Sbjct 1506 ACCAACCCCTTCGACTTCATGGAGATGATCTCCCTCACCGGCAAGACCAACTTCTTCGAG 1565 Query 47562 AAGCGCGTCGGCGAATA 47578 ||| |||| ||| || Sbjct 1566 AAGAAGGTCGCCGAGTA 1582 >seq866 Length=6634 Score = 165 bits (182), Expect = 8e-36 Identities = 258/364 (71%), Gaps = 4/364 (1%) Strand=Plus/Plus Query 47217 GGAGTTATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAGACGAAGGCCTGCAC 47276 || || |||||||||||||| || ||||||||||| |||||| | ||||| ||||||||| Sbjct 20 GGCGTGATGCCCGGCCTCACCTTCAGCAACGAGCTCATCTCGCGCGACGAGGGCCTGCAC 79 Query 47277 ACCAACTTTGCCTGTCTCTACTACAACA-CTAGAGTCGATCAAAAGTTGGACGTGCCCAC 47335 ||| |||| ||||| || ||||||| ||| | || | || ||| | | || || | Sbjct 80 ACCGACTTCGCCTGCCTGCTGTACAACAGCTACA-TCAAGCACAAGCT-GCCGCGCGAGC 137 Query 47336 -CGTCAGCGACATGTTTGCCGAAGCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGCTC 47394 ||| ||||| | |||| ||||||| ||| |||| |||||| || ||| || | Sbjct 138 GCGTGCTGGACATCATCACCGACGCCGTCGTCATCGAGAAGGAGTTCATCTGCGACGCGC 197 Query 47395 TGCCCGAATCTTTAGTGGGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCG 47454 |||||| | | || |||||||| || | ||||| |||||||||| || |||| Sbjct 198 TGCCCGTGCGCCTCATCGGCATGAACGCCGACCTCATGAGCCAGTACATCGAGTTCGTCG 257 Query 47455 CCGACCGCCTGCTCGTTCAGCTAAAGTATCCCAAGATTTACCACACCGAGAATCCATTCG 47514 | |||||||||||||| ||| ||| ||| || || || || |||| Sbjct 258 CGGACCGCCTGCTCGTGTCGCTGGGCCTGGAGAAGCACTACAACTCCACCAACCCCTTCG 317 Query 47515 AGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCG 47574 | || ||| | | || || ||| |||||||||||||| ||||||||| |||| || Sbjct 318 ACTTCATGGAGATGATCTCCCTCACCGGCAAGACCAACTTCTTCGAGAAGAAGGTCGCCG 377 Query 47575 AATA 47578 | || Sbjct 378 AGTA 381 >seq36 Length=60674 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || ||||| | |||| ||| | || | ||| ||||| || ||||| ||||| || | Sbjct 7264 CCGCCGCGGAGGCGCAGCACGAGGTGCAGCGTGGACTCCTTCTGAATGTTGTAGTCCGCG 7205 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| || || ||||| || |||||| |||| | |||||||| || || || Sbjct 7204 AGCGTGCGGCCCTCCTCGAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCCGGCGGG 7145 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| ||| || ||| | | |||| |||||| | |||||| Sbjct 7144 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTCGCCTCGACC 7085 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 |||| || | ||| |||||||||||||| || || || ||||||||| Sbjct 7084 TCGAGGGCGATCGTCTTGCCGGTCAGAGTCTTCACGAAGATCTGCATG 7037 >seq455 Length=15778 Score = 122 bits (134), Expect = 8e-23 Identities = 171/239 (72%), Gaps = 2/239 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || ||||| | || | ||||| || | ||| ||||| || || || ||||| || | Sbjct 11 CCGCCGCGCAGACGGAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCG 70 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||| || || || ||||| || ||||| |||||| |||||||| || ||||| Sbjct 71 AGCGTACGGCCCTCCTCCAGCTGCTTACCAGCAAAGATCAGGCGCTGCTGGTCCGGAGGG 130 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| ||| ||| ||| | | |||| ||||| | ||| || Sbjct 131 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCACC 190 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGG--CTTATTTA 127123 || | || | ||| ||||||||||| || || ||||| |||||||||| ||||||| Sbjct 191 TCCAGGGCGATCGTCTTGCCGGTCAGCGTCTTCACAAAGATCTGCATGGTAATTATTTA 249 >seq257 Length=25438 Score = 120 bits (132), Expect = 3e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || ||||| | |||| ||||| || | ||| ||||| || || || ||||| || | Sbjct 22230 CCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCG 22289 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| || || ||||| || ||||| |||||| |||||||| || ||||| Sbjct 22290 AGCGTGCGGCCCTCCTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGAGGG 22349 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| ||| ||| ||| | | |||| ||||| | ||| || Sbjct 22350 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCACC 22409 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGG 127115 || | || | ||| ||||||||||| || || || || || ||||||| Sbjct 22410 TCCAGGGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATTTGCATGG 22458 >seq2 Length=121565 Score = 120 bits (132), Expect = 3e-22 Identities = 679/1067 (64%), Gaps = 39/1067 (4%) Strand=Plus/Plus Query 146446 AAGGCGTCGGCGAGACCCTGTATCCCGACACCAACGGGGCGGTGTTTCTTGTTACTGTTC 146505 |||||||| ||||| ||||| | |||| || | ||||||||| | |||| ||| | Sbjct 25582 AAGGCGTCTGCGAGGCCCTGCACGCCGAGGCCGATGGGGCGGTGGCGCATGTTGCTGCGC 25641 Query 146506 GCAGCGCCCGCAGTGGGATAGTGGTTGCTGTCGATGATCTTGTTGAGATTACGCACGACA 146565 | ||| | | ||| |||| ||| | ||| |||| |||||| || | | | | Sbjct 25642 TCGGCGGTCTCGACGGGGTAGTAGTTTCGGTCTATGACACGGTTGAGGTT--GTAGGTGA 25699 Query 146566 ATT--TTCGTCAAACGATTCAGCAGGACATAGTCAAATGTTTTAGTTTTAACGTTGACGC 146623 | ||||||| || ||| | | |||||| || | | ||| || Sbjct 25700 TCTCCTTCGTCACCTCATAGAGCCGCTGGTGGTCAAACTCGTTCTTCTCGCGGTTCACAA 25759 Query 146624 ACTTGTTGACGGCGATAGAGGCCAAGTTACATACGGCAGTCTCGTCCTTGTCGCAATACT 146683 ||||| | ||||| ||||||| ||| || || || ||||||||||| | |||| Sbjct 25760 ACTTGGACAGCGCGATCGAGGCCAGGTTGCACACCGCCGTCTCGTCCTTCGAGGTGTACT 25819 Query 146684 GCACAATCTCGGCGCAGAGGTTGCTGCACTTGATGATGCCCAAAtttttttGGTT--ACT 146741 | ||||| | ||| ||||| |||||||||| |||| | || | ||||| ||| Sbjct 25820 CGATGATCTCCGTGCACAGGTTAGAGCACTTGATGGTGCCGAGGTTCTGCTGGTTCGACT 25879 Query 146742 AAACTTGTTGCAGGGGTCCTTGTAGAGCATGTACGGTCCCCCGGTTTCGACATTGGTCTC 146801 | |||||||| ||||||||||||||| |||| | || ||||||| | | ||| Sbjct 25880 TGGC--GTTGCAGGCATCCTTGTAGAGCATGAACGGCACGCCCGTTTCGATCTGAGACTC 25937 Query 146802 GACGATGAATCTAAACAAATCT-CTG-GCCTTTACTTGTCTTTCGTACAGTTTATTCTTT 146859 | ||| | || || | || ||| |||| || | | || ||| | Sbjct 25938 CAGAATG--GCAAACCACAGCTCCTGCGCCTGGACGGTGCGGATGCCCATACCCTTCGCT 25995 Query 146860 TCGTATTTCTCGTACAATATTTCAAA--ACTAGAACCGTACTCGTCGAGGAGGCCGGGAT 146917 ||||| |||||| | | || || || | |||| |||| ||||||||| Sbjct 25996 TCGTACCCCTCGTAGAGCTTCTCGAACTCCTCG--CCGTGGCAGTCGCTGAGGCCGGGCG 26053 Query 146918 ACTTTTTGGGACAGAACAGCGACCATTCTTTATTCTC-CTTCACGCGTTCCATAAACAAA 146976 | | ||||| | |||| ||| | | || | ||||||||| | ||| || | Sbjct 26054 TCGTGTTGGGGTCCATGAGCGTCCACT-TGCCCTCACTCTTCACGCGCTTCATGAAGAGG 26112 Query 146977 TCGGGAATCCAAAG-GCCCAGCATCAAGTCGCGAGCCTTGGCGTCCTCGGAGCCCATGTT 147035 || || ||||| || || || | | |||||| || |||||| ||| |||| Sbjct 26113 TCCGGGATCCAGAGCGCGTAG-AAGAGGTCGCGCGCGCGCTGGTCCTCCTTGCCAGTGTT 26171 Query 147036 GCGTCTCAAGTTGAGGACATCGTAAATTTCCGGATGCCAAGGCTCCACGTATGCGGCGAG 147095 ||| ||| | |||| ||| | || || | ||||| ||||| | ||| ||||| Sbjct 26172 GCGCTTCATGAGCAGGAACTCGAAGATGTCGGCGTGCCACGGCTCGAGGTACATGGCGAA 26231 Query 147096 TGCGCCTTTTCGCTTA---CCGCCCTGATCGACGTGGCGCACCATGTTATTGAAGACTCG 147152 ||||| || |||||| ||||||||||| |||| ||| || |||| || | || || Sbjct 26232 GGCGCCCTTGCGCTTACCGCCGCCCTGATCAACGTAGCGGGCCGTGTTGTTCCACACGCG 26291 Query 147153 TAACATGGACACGAGGCCGCCGGATTT---TGTGGTGC---CGTTGTA-TTG-----AGC 147200 | ||| | || ||||||| || | |||||| || |||| || || Sbjct 26292 GATCATCGGCATGAGGCCGTTCGACGTGCCGTTGGTGCCCGCGATGTAGCTGCCGGCCGC 26351 Query 147201 GCTGACGCTTTGCACGCTCAGCCCGAGACCTCCGCCCAGATTCGAAATCAAAGCGGACTC 147260 || || | | || | | || | || || || || |||| ||| |||| Sbjct 26352 GCGGATGTTGTGGATATGGATGCCAATGCCGCCAGCCGCCTTGCTGATCACGGCGCACTC 26411 Query 147261 GTGCAAGGTCTTGTAGATGCCGTCGATGCTGTCTTCCTTGATGCATTGCAGGAAACACGA 147320 | || || | ||||||||| ||||||||||| ||||| || |||||| ||||| Sbjct 26412 CTTCAGCGTGTCGTAGATGCCCTCGATGCTGTCGTCCTTCATCGCGACCAGGAAGCACGA 26471 Query 147321 ACACATTTGGGGACGACACGTGCCCGCCGCAAACAGCGTGGGGCTGGCGTGCGTGAACGT 147380 | ||| || || || || || || ||||||||| ||||||||||||| Sbjct 26472 GCTCATCTGCGGCTTGGGGGTACCGGCGTTGAAGAGCGTGGGGGTGGCGTGCGTGAAGAA 26531 Query 147381 GCCCAGACTCATCA--ATTGATACGTTTCAATGGCGCTCATAACGTCATCGCCGTGAATG 147438 |||| | ||| | || || ||| | |||||| | ||| | |||||| ||| Sbjct 26532 GCCCTGCGACATGAGCATGTATGTGTTGCGGACGCGCTC--CAGGTCCTTGCCGTGGATG 26589 Query 147439 GCCAGGGCGACGCGCATGAGCATGTGCTGGGGTCGTTCCGCAATCAC 147485 | | || ||||||| || ||||||||| || || ||| | ||||| Sbjct 26590 CCAATCGCCACGCGCAGGATCATGTGCTGCGGACGCTCCACGATCAC 26636 >seq782 Length=7656 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | || | ||||| || | ||| ||||| || || || ||||| || | Sbjct 7411 CCACCGCGCAGACGGAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCG 7470 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||| || || || ||||| || ||||| |||||| |||||||| || ||||| Sbjct 7471 AGCGTACGGCCCTCCTCCAGCTGCTTACCAGCAAAGATCAGGCGCTGCTGGTCCGGAGGG 7530 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| ||| ||| ||| | | |||| ||||| | ||| || Sbjct 7531 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCACC 7590 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | || | ||| ||||||||||| || || || || ||||||||| Sbjct 7591 TCCAGGGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATG 7638 >seq2803 Length=585 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || ||||| | || | ||||| || | ||| ||||| || || || ||||| || | Sbjct 14 CCGCCGCGCAGACGGAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCG 73 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||| || || || ||||| || ||||| |||||| |||||||| || ||||| Sbjct 74 AGCGTACGGCCCTCCTCCAGCTGCTTACCAGCAAAGATCAGGCGCTGCTGGTCCGGAGGG 133 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| ||| ||| ||| | | |||| ||||| | ||| || Sbjct 134 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCACC 193 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | || | ||| ||||||||||| || || || || ||||||||| Sbjct 194 TCCAGGGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATG 241 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || ||||| | || | ||||| || | ||| ||||| || || || ||||| || | Sbjct 242 CCGCCGCGCAGACGGAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCG 301 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||| || || || ||||| || ||||| |||||| |||||||| || ||||| Sbjct 302 AGCGTACGGCCCTCCTCCAGCTGCTTACCAGCAAAGATCAGGCGCTGCTGGTCCGGAGGG 361 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| ||| ||| ||| | | |||| ||||| | ||| || Sbjct 362 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCACC 421 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | || | ||| ||||||||||| || || || || ||||||||| Sbjct 422 TCCAGGGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATG 469 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475482956832480