Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20culicis_20[genbank_20GCA_5F000482145.1_202013-10-25] 3,002 sequences; 23,587,153 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq2 300 2e-76 seq1609 109 7e-19 >seq2 Length=121565 Score = 300 bits (332), Expect = 2e-76 Identities = 909/1382 (66%), Gaps = 38/1382 (3%) Strand=Plus/Plus Query 115841 TGAGATCCTCCACGAGGTGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCA 115900 |||| ||| |||||||| ||| || ||||| ||||| || || ||| | || Sbjct 25178 TGAGGTCCATCACGAGGTACTTGTTCACAACGGGGAACTCGCCGCTCAGCACGCGGCGCA 25237 Query 115901 GATAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGG 115960 |||||||||| ||| | ||||| |||||||| ||||| |||| || || | |||| Sbjct 25238 CGTAGATGTTGGAGGTGAAGGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGCGACGTGG 25297 Query 115961 AGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTT 116020 |||| || ||||| || || | ||| || |||||| | || ||| || | ||| | Sbjct 25298 AGGCGGTCGGCATCGGCGCGAGGAGCAGCGAGTTGCGCATGCCAACCTCCACGACGCGCT 25357 Query 116021 CCTTGAGGGCGTCCCAGTCGTAGTTGAG---CTTTGTCTCCCCCTCCCACATATCAAACT 116077 ||| | ||| ||||||| || | ||| | | | ||| ||||| || |||| Sbjct 25358 TCTTCAAGGCCGCCCAGTCCCAGCGGCCGCTCTTCGGCGTCTCCTTCCACAGGTCGAACT 25417 Query 116078 GGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCG 116137 | || | || | ||||| || |||| || ||||| || |||||||| ||| ||| Sbjct 25418 GCAGCAGCCCCTTCGACGCGGGGCTGCCCTGGAACGTCTCGTAGGGGCCCTCCACCGCCG 25477 Query 116138 CCAATTC---GGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCAT 116194 ||| || |||| | ||| | || ||| || || ||||| || ||| | | Sbjct 25478 CCAGGTCCACGGAG---GACTCCACCGCGCCGTAGTAGATGGTCTCGAAGATGTCCTCGT 25534 Query 116195 TCATTGCCTTGGCCTCGTCGGAATCA--AACGCGAGACGGCACAAAATAAATACATCCGC 116252 | | || ||||| ||| || || | ||| ||| || || | || || Sbjct 25535 TGAGGCGCTGCGCCTC--CGGGCTCGTGAAGGAGAGCCGGAGCAGGCAGAAGGCGTCTGC 25592 Query 116253 GAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGA-CTTTCGAGCGGTCT 116311 ||| || || || |||||||| || ||||| || | ||| || | ||| ||||||| Sbjct 25593 GAGGCCCTGCACGCCGAGGCCGATGGGGCGGTGGCGCATGTTGCTGCGCTCG-GCGGTCT 25651 Query 116312 CCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGA 116371 | ||||| || | || | || || || | || || || | ||||| |||| || | Sbjct 25652 CGACGGGGTAGTAGTTTCGGTCTATGACACGGTTGAGGTTGTAGGTGATCTCCTTCGTCA 25711 Query 116372 TTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGG 116431 |||| ||| | || ||||| | |||| || ||| |||| | || | Sbjct 25712 CCTCATAGAGCCGCTGGTGGTCAAACTCGTTCTTCTCGCGGTTCACAAACTTGGACAGCG 25771 Query 116432 CGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCG 116491 |||| || ||||| || ||||| | ||||| ||||| |||||||| || || |||| Sbjct 25772 CGATCGAGGCCAGGTTGCACACCGCCGTCTCGTCCTTCGAGGTGTACTCGATGATCTCCG 25831 Query 116492 TACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACG 116551 | |||| || || | ||| |||||||| | ||||| || || ||||| | ||| || | Sbjct 25832 TGCACAGGTTAGAGCACTTGATGGTGCCGAGGTTCTGCTGGTTCGACTTGGCGTTGCAGG 25891 Query 116552 CATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCC 116611 |||||||||||||||| | ||| ||||| || | || |||| ||||| || || Sbjct 25892 CATCCTTGTAGAGCATGAACGGCACGCCCGTTTCGATCTGAGACTCCAGAATGGCAAACC 25951 Query 116612 ATA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAG 116670 | | | | ||| |||| || ||| | || | |||| | | |||||| |||| Sbjct 25952 ACAGCTCCTGCGCCTGG-ACGGTGCGGATGCCCATACCCTTCGCTTCGTACCCCTCGTAG 26010 Query 116671 AGGGCCTCAAACTCTTCACC--CACAGCCTCTGAGAGCCCTGGTGCCTTATCTGGACAGA 116728 || ||| ||||| || || ||| | || ||| || || | | | | || | Sbjct 26011 AGCTTCTCGAACTCCTCGCCGTGGCAGTCGCT--GAGGCCGGGCGTCGTGTTGGGGTCCA 26068 Query 116729 AGAGAGACCA-TTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGC 116787 ||| | ||| ||| || | ||| || || ||||||||||||||||| |||||||||||| Sbjct 26069 TGAGCGTCCACTTGCCCTCACTCTTC-ACGCGCTTCATGAAGAGGTCCGGGATCCAGAGC 26127 Query 116788 GCCGAGAAGAGATCCCGACAGCG-AGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAA 116846 || ||||||| || || ||| | | || | | || || ||| | || || Sbjct 26128 GCGTAGAAGAGGTCGCGCGCGCGCTGGTCCTCCTTGCCAGTG-TTGCGCTTCATGAGCAG 26186 Query 116847 AAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCG--- 116903 || || | ||| || ||||||||||| || ||||||| |||| | |||||||| Sbjct 26187 GAACTCGAAGATGTCGGCGTGCCACGGCTCGAGGTACATGGCGAAGGCGCCCTTGCGCTT 26246 Query 116904 ACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGAT 116963 || || |||| | || || | ||||| ||| | ||||| | ||| || |||| Sbjct 26247 ACCGCCGCCCTGATCAACGTAGCGGGCCGTGTTGTTCCACACGCGGATCATCGGCATGAG 26306 Query 116964 ACCATCAGATTGGCCATTTGT-CCCCCGA-ATACGAGACTTGTTGGCTCTGACATCGTGG 117021 || | || ||| || || ||| ||| || | | | || | || | |||| Sbjct 26307 GCCGTTCGACGTGCCGTTGGTGCCCGCGATGTAGCTGCC--GGCCGCGCGGATGTTGTGG 26364 Query 117022 ATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCG 117081 || || || ||||| || || ||| ||| ||| ||||||||| | || || || Sbjct 26365 ATATGGATGCCAATGCCGCCAGCCGCCTTGCTGATCACGGCGCACTCCTTCAGCGTGTCG 26424 Query 117082 TAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGC---AGCTCGACATTTGT 117138 ||||| || ||||| ||| |||| | |||| ||||||| |||| ||| || Sbjct 26425 TAGATGCCCTCGATGCTGTCGTCCTTCATCGCGACCAGGAAGCACGAGCT---CATCTGC 26481 Query 117139 GGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTGGGAC 117198 ||| | || ||||| ||||||||||| || || || ||||| |||| | || || ||| Sbjct 26482 GGCTTGGGGGTACCGGCGTTGAAGAGCGTGGGGGTGGCGTGCGTGAAGAAGCCCTGCGAC 26541 Query 117199 AT 117200 || Sbjct 26542 AT 26543 >seq1609 Length=2085 Score = 109 bits (120), Expect = 7e-19 Identities = 349/531 (66%), Gaps = 18/531 (3%) Strand=Plus/Minus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 ||| || ||||| ||||||||||||||| ||||| || |||| ||| ||||||| Sbjct 1583 GTACTCGGCGACCTTCTTCTCGAAGAAGTTGGTCTTGCCGGTGAGGGAGATCATCTCCAT 1524 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAGGAGACG 127350 || || || ||||| | ||||| | | || || | | ||| || || Sbjct 1523 GAAGTCGAAGGGGTTGGTGGAGTTGTAGTGCTTCTCCAGGCCCAGCGACACGAGCAGGCG 1464 Query 127351 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTACA 127410 |||| |||| |||| ||||||| ||| || | |||||| ||||||||| || Sbjct 1463 GTCCGCGACGAACTCGATGTACTGGCTCATGAGGTCGGCGTTCATGCCGATGAGGCG-CA 1405 Query 127411 TGGG-AGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCGT 127469 ||| |||||||| |||||||| ||||||| ||| | || || || | |||| | Sbjct 1404 CGGGCAGCGCGTCGCAGATGAACTCCTTCTCGATGACGACGGCGTCGGTGATGATGTCCA 1345 Query 127470 GAATAGTGTC-CACCCCAGGTCTATTGCGTAAAGTC----TTGAAGAGTTCCA--CAG-C 127521 | | || | | ||| || || | | || ||| | || || ||| | Sbjct 1344 GCACGCGCTCGCGCGGCAG--CTTGTGTTTGATGTGGCTGTTGTACAG---CAGGCAGGC 1290 Query 127522 AAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGG 127581 || || ||| || |||||||| || |||||||| || || |||| || || || Sbjct 1289 GAAGTCGGTGTGCAGGCCCTCGTCGCGCGAGATGAGCTCGTTGCTGAAGGTGAGGCCGGG 1230 Query 127582 CATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCC 127641 ||| | || |||||||| | |||||| || | || || ||||| ||||||||||| || Sbjct 1229 CATCACGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAGCCGGAGAAGAAGATGCC 1170 Query 127642 CTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCA 127701 ||| || |||||| | | || ||||| ||| | | | | || | | ||| Sbjct 1169 CTCGACGGCCGCGAAGCCGATGAGCCGCTCCTGGAAGCTG-GCGGCGCTG--CCGATCCA 1113 Query 127702 CTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGC 127752 || ||||| | ||||| |||| ||| || |||| ||||||||| || Sbjct 1112 GCGCACGGCCCAGTTGGCCTTCTTCTGGATGCAGGGGATGGTCTGGATGGC 1062 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613484178142320