Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20culicis_20[genbank_20GCA_5F000482145.1_202013-10-25] 3,002 sequences; 23,587,153 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq1609 161 2e-34 seq866 131 3e-25 seq2 111 3e-19 >seq1609 Length=2085 Score = 161 bits (178), Expect = 2e-34 Identities = 358/534 (67%), Gaps = 5/534 (1%) Strand=Plus/Minus Query 159628 CTTCTTGTATTGCGACACATTCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGA 159687 ||||| ||| | | || ||||||||||| |||||||||||||| | ||| || Sbjct 1589 CTTCTGGTACTCGGCGACCTTCTTCTCGAAGAAGTTGGTCTTGCCGGTGAGGGAGATCAT 1530 Query 159688 TTCCATGAACCCGAATGGGTTCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAG 159747 |||||||| |||| ||||| | || ||| ||||| | || || | | | || Sbjct 1529 CTCCATGAAGTCGAAGGGGTTGGTGGAGTTGTAGTGCTTCTCCAGGCCCAGCGACACGAG 1470 Query 159748 CAACCTGTCTGCCACAAATTCGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAG 159807 || | ||| || || || |||||||| | ||| | || ||| || || | || Sbjct 1469 CAGGCGGTCCGCGACGAACTCGATGTACTGGCTCATGAGGTCGGCGTTCATGCCGATGAG 1410 Query 159808 CCTAACGGGGAGCGCTTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAAT 159867 | ||||| ||||| || | | ||||||||||| || |||| || ||||| | || Sbjct 1409 GCGCACGGGCAGCGCGTCGCAGATGAACTCCTTCTCGATGACGACGGCGTCGGTGATGAT 1350 Query 159868 CTGCGAGACACGTTCGTACCCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGC 159927 | | || || ||| | | ||||| |||||| || |||| ||||| || Sbjct 1349 GTCCAGCACGCGCTCGCGCGGCAGCTTGTGTTTGATGTGGCTGTTGTACAGCAGGCAGGC 1290 Query 159928 AAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGG 159987 |||||| |||||| |||||||| || ||||||| ||||||| | | ||||||| || Sbjct 1289 GAAGTCGGTGTGCAGGCCCTCGTCGCGCGAGATGAGCTCGTTGCTGAAGGTGAGGCCGGG 1230 Query 159988 CATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCA-CCGCTAAAAAAGATCC 160046 ||| | || ||| |||||||| || |||| ||| ||| | ||| || ||||| | Sbjct 1229 CATCACGCCGCGCTTCTTGAGCCAGAAGATGG-AGCAGAAGGAGCCGGAGAAGAAGATGC 1171 Query 160047 CCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCC 160106 |||| |||||||| || | | ||||| ||| || |||| | || | | ||| Sbjct 1170 CCTCGACGGCCGCGAAGCCGATGAGCCGCTCCTGGAAGCTGGCGGCGCTGCC---GATCC 1114 Query 160107 ACCTTTTGGCCCATTCAGCCTTCTTTGCGATGCACGGCATGCGCTCGACGGCGT 160160 | | |||||| | |||||||| |||||| || ||| || || ||||| Sbjct 1113 AGCGCACGGCCCAGTTGGCCTTCTTCTGGATGCAGGGGATGGTCTGGATGGCGT 1060 >seq866 Length=6634 Score = 131 bits (144), Expect = 3e-25 Identities = 261/387 (67%), Gaps = 0/387 (0%) Strand=Plus/Minus Query 159628 CTTCTTGTATTGCGACACATTCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGA 159687 ||||| ||| | | || ||||||||||| |||||||||||||| | ||| || Sbjct 388 CTTCTGGTACTCGGCGACCTTCTTCTCGAAGAAGTTGGTCTTGCCGGTGAGGGAGATCAT 329 Query 159688 TTCCATGAACCCGAATGGGTTCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAG 159747 |||||||| |||| ||||| | || ||| ||||| | || || | | | || Sbjct 328 CTCCATGAAGTCGAAGGGGTTGGTGGAGTTGTAGTGCTTCTCCAGGCCCAGCGACACGAG 269 Query 159748 CAACCTGTCTGCCACAAATTCGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAG 159807 || | ||| || || || |||||||| | ||| | || ||| || || | || Sbjct 268 CAGGCGGTCCGCGACGAACTCGATGTACTGGCTCATGAGGTCGGCGTTCATGCCGATGAG 209 Query 159808 CCTAACGGGGAGCGCTTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAAT 159867 | ||||| ||||| || | | ||||||||||| || |||| || ||||| | || Sbjct 208 GCGCACGGGCAGCGCGTCGCAGATGAACTCCTTCTCGATGACGACGGCGTCGGTGATGAT 149 Query 159868 CTGCGAGACACGTTCGTACCCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGC 159927 | | || || ||| | | ||||| | |||| | || |||| ||||| || Sbjct 148 GTCCAGCACGCGCTCGCGCGGCAGCTTGTGCTTGATGTAGCTGTTGTACAGCAGGCAGGC 89 Query 159928 AAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGG 159987 |||||| |||||| |||||||| || ||||||| ||||||| | | ||||||| || Sbjct 88 GAAGTCGGTGTGCAGGCCCTCGTCGCGCGAGATGAGCTCGTTGCTGAAGGTGAGGCCGGG 29 Query 159988 CATGATCCCACGCGGTTTGAGCCAAAA 160014 ||| | || ||| |||||||| || Sbjct 28 CATCACGCCGCGCTTCTTGAGCCAGAA 2 >seq2 Length=121565 Score = 111 bits (122), Expect = 3e-19 Identities = 484/756 (64%), Gaps = 10/756 (1%) Strand=Plus/Plus Query 204844 GGCCAGATTGCACACCGCGGGTCT-GTGTGGCTCGCTCACCTCCACGATCTCGGTGCACA 204902 |||||| ||||||||||| | ||| || | | | ||| | |||||| ||||||| Sbjct 25779 GGCCAGGTTGCACACCGCCG-TCTCGTCCTTCGAGGTGTACTCGATGATCTCCGTGCACA 25837 Query 204903 AGTTACCGCACTTCACCACCCCCACATGCTGCTGGTTAGACTTGCGGTTACAGGAGTCCT 204962 |||| |||||| | || | | ||||||||| |||||| ||| |||| |||| Sbjct 25838 GGTTAGAGCACTTGATGGTGCCGAGGTTCTGCTGGTTCGACTTGGCGTTGCAGGCATCCT 25897 Query 204963 TGTACATCATGAACGGCATTCCGTTCTCCATCTGAGATCGCAGAATGTGGGTCCACAATT 205022 |||| | ||||||||||| || | || |||||||| ||||||| ||||| | Sbjct 25898 TGTAGAGCATGAACGGCACGCCCGTTTCGATCTGAGACTCCAGAATGGCAAACCACAGCT 25957 Query 205023 CGCGAGCCTCCACT-TGCTTCACGTACATCCCTTGAGACTCGTATTTTGTGTACAGCGCC 205081 | | |||| || ||| | | ||| || | | ||||| ||| ||| | Sbjct 25958 CCTGCGCCTGGACGGTGCGG-ATGCCCATACCCTTCGCTTCGTACCCCTCGTAGAGCTTC 26016 Query 205082 ACAAAGTCAGAACCGTACACGTCCATCAGCCCTGGACATTTTTTGGGACACATCAGAGAC 205141 | || || |||| ||| | || || || | ||||| ||| || | | Sbjct 26017 TCGAACTCCTCGCCGTGGCAGTCGCTGAGGCCGGGCGTCGTGTTGGGGTCCATGAGCGTC 26076 Query 205142 CACATCTGATCGTCTTTCACCCTCTCCATAAACAGGTCGCTGATCCACAGGCCGTAAAAC 205201 ||| | || ||||| | || ||| || ||||| |||||| || |||| || Sbjct 26077 CACTTGCCCTCACTCTTCACGCGCTTCATGAAGAGGTCCGGGATCCAGAGCGCGTAGAAG 26136 Query 205202 AGATCACGGGCCCTAATTCCGTCGTCTCCAAGGTTCTTTTTCAAGTCCAGCCAAGCCGCA 205261 || || || || | | || | ||| ||| |||| | ||| || || | Sbjct 26137 AGGTCGCGCGCGCGCTGGTCCTCCTTGCCAGTGTTGCGCTTCATGAGCAGG-AACTCGAA 26195 Query 205262 -ATGTCGGCGTGCCACGGCTCTAACCACACGGCCATTGCGCCTGGCCTCTTGTTCCCACC 205320 |||||||||||||||||||| | ||| ||| | ||||| | ||| || || Sbjct 26196 GATGTCGGCGTGCCACGGCTCGAGGTACATGGCGAAGGCGCCCTTGCGCTTACCGCCGCC 26255 Query 205321 CTGGTCCACCATGCGAGTCATCGCGTTGAAAACTCGCAGCATCGGCACCAGACCGTTGGC 205380 ||| || || ||| | | | ||| | || || | |||||||| || ||||| | Sbjct 26256 CTGATCAACGTAGCGGGCCGTGTTGTTCCACACGCGGATCATCGGCATGAGGCCGTTCGA 26315 Query 205381 GGTCCCGTTCGTGCTGTTGATGGCCGAGCCTTCAGCCCTCACGT--TGGAGATGGCCGCG 205438 || ||||| |||| |||| ||| | || | | || |||| |||| | Sbjct 26316 CGTGCCGTTGGTGCCCGCGATGTAGCTGCCGGCCGCGCGGATGTTGTGGATATGG--ATG 26373 Query 205439 CCAATCCCGCCAGAACACTTGGCGATCTGGGCGCACTCTTGCAGAGTGCTGTAGATGCCT 205498 ||||| ||||||| |||| |||| ||||||||| | ||| ||| ||||||||| Sbjct 26374 CCAATGCCGCCAGCCGCCTTGCTGATCACGGCGCACTCCTTCAGCGTGTCGTAGATGCCC 26433 Query 205499 GCGATGGAATCGTCCGCCAGTGTCACCAGATAGCACGAAGCCAGCTTGGCAAAGTTGGTG 205558 ||||| |||||| || | ||||| ||||||| || || | | ||| Sbjct 26434 TCGATGCTGTCGTCCTTCATCGCGACCAGGAAGCACGAGCTCATCTGCGGCTTGGGGGTA 26493 Query 205559 CCCGCGTGGAAGAGCGTGGGGCTGGCGTGGCTGAAG 205594 || |||| ||||||||||||| ||||||| ||||| Sbjct 26494 CCGGCGTTGAAGAGCGTGGGGGTGGCGTGCGTGAAG 26529 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795125361801120