Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20culicis_20[genbank_20GCA_5F000482145.1_202013-10-25] 3,002 sequences; 23,587,153 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq1609 356 2e-93 seq866 165 8e-36 seq36 134 1e-26 seq257 129 6e-25 seq2803 127 2e-24 seq455 122 9e-23 seq782 120 3e-22 >seq1609 Length=2085 Score = 356 bits (394), Expect = 2e-93 Identities = 648/934 (69%), Gaps = 32/934 (3%) Strand=Plus/Minus Query 132591 CATCACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTC 132650 ||| ||||| || || || ||| | ||||| ||||| || || || || || || Sbjct 1601 CATGACGCCGGCCTTCTGGTACTCGGCGACCTTCTTCTCGAAGAAGTTGGTCTTGCCGGT 1542 Query 132651 CAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGGTGCCGAT 132710 | ||| || | | ||| || || |||||||||| | |||||||||||| | Sbjct 1541 GAGGGAGATCATCTCCATGAAGTCGAAGGGGTTGGTGGAGTTGTAGTGCTTCTCCAGGCC 1482 Query 132711 CAGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATT 132770 ||| |||||||| | ||| || |||||||||||||| || |||| ||| || Sbjct 1481 CAGCGACACGAGCAGGCGGTCCGCGACGAACTCGATGTACTGGCTCATGAGGTCGGCGTT 1422 Query 132771 AAGTCCCAGCAGACGCACCGGCAGCGCTTCGGTGA-GAAAGCGTTGCTCGATGGCGACCG 132829 | || | || ||||| |||||||| ||| || ||| | || ||||||| |||| | Sbjct 1421 CATGCCGATGAGGCGCACGGGCAGCGCGTCGCAGATGAACTCCTT-CTCGATGACGACGG 1363 Query 132830 CGTCGGTGACGATTTCCCTAACGCGCGCCGCGCTCGGCCG-TTGCACCAAATGC-----T 132883 ||||||||| ||| ||| |||||| | || |||| | ||| ||| | Sbjct 1362 CGTCGGTGATGATGTCCAGCACGCGCTC---GCGCGGCAGCTTGTGTTTGATGTGGCTGT 1306 Query 132884 TGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGC 132943 || ||| || ||| || |||||| |||| ||||||||| | || ||||| ||||||| Sbjct 1305 TGTACAGCAGGCAGGCGAAGTCGGTGTGCAGGCCCTCGTCGCGCGAGATGAGCTCGTTGC 1246 Query 132944 TGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGC 133003 |||| || | ||||||||| | |||||| || |||||||| || |||| | ||| || Sbjct 1245 TGAAGGTGAGGCCGGGCATCACGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAGC 1186 Query 133004 CCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTT 133063 | || ||||||| |||||||||||||||||| | | || ||||| ||| |||| Sbjct 1185 CGGAGAAGAAGATGCCCTCGACGGCCGCGAAGCCGATGAGCCGCTCCTGGAAGCTGGCGG 1126 Query 133064 CTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTT 133123 | |||| |||||||||||| ||||| | |||||| | | || ||| || || || | Sbjct 1125 C---GCTGCCGATCCAGCGCACGGCCCAGTTGGCCTTCTTCTGGATGCAGGGGATGGTCT 1069 Query 133124 CGATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACG-CACGTAGGTGTCGATGAGG 133182 |||||||| || || || || ||||| || | || | ||||||||||| || Sbjct 1068 GGATGGCGTGCAGCAGGCGCAGCTTCTC-CGCGCTGTCCGTGATGTAGGTGTCGAGCAGC 1010 Query 133183 GTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGC 133242 ||| ||| | || ||||| | ||||||||| || || |||||||| ||| ||| Sbjct 1009 ACCGAGTACGTCTCGGAGTGGATGTTCTCCATCATGAGCTGGAAGCCGTAGAAGGCGCGC 950 Query 133243 GCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCG 133302 |||||| ||||| || || ||| ||| | | || || ||| |||||||||| Sbjct 949 GCCTCGGGCACCTTGACGTCGGACATGAAGCGCACCGCGAGGTTCTCGACGACGATGCCG 890 Query 133303 TCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAG 133362 |||||| ||||||| ||||||||||||||||||||||| || ||||| ||| ||| Sbjct 889 TCGCTGCCGGCGAAGAAGGCCAGCACGTGCTTGATGAAGTGCTGCTCGCCCTCGCTCA-- 832 Query 133363 CGCT---CCCAGTCGCGCG-TGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGA 133418 ||| |||||||| ||| ||| || ||||| | |||||| | ||||| || Sbjct 831 -GCTTGACCCAGTCG-GCGAGGTCGCTGCCGAGGTCGATCTCCTCCAGCGTCCA----GA 778 Query 133419 CGC--CTCGGCT--TTTTTGTACATACTCCACATGTCCGAATATTGTATGGGAAAAATCA 133474 || ||| || | |||||| | | ||| ||||| | || ||||| || | || Sbjct 777 TGCAGCTCTCCTGCTCCTTGTACTTGCGCCAGATGTCGTGGAACTGGATGGGGAAGAGCA 718 Query 133475 CAAACCGGCGGGGGTTTTCGCGCAACAGCGGCTC 133508 | | ||| |||||| || || ||||||||| Sbjct 717 CGTAGCGGTAGGGGTTCTCCTGCTGCAGCGGCTC 684 >seq866 Length=6634 Score = 165 bits (182), Expect = 8e-36 Identities = 281/403 (70%), Gaps = 11/403 (3%) Strand=Plus/Minus Query 132591 CATCACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTC 132650 ||| ||||| || || || ||| | ||||| ||||| || || || || || || Sbjct 400 CATGACGCCGGCCTTCTGGTACTCGGCGACCTTCTTCTCGAAGAAGTTGGTCTTGCCGGT 341 Query 132651 CAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGGTGCCGAT 132710 | ||| || | | ||| || || |||||||||| | |||||||||||| | Sbjct 340 GAGGGAGATCATCTCCATGAAGTCGAAGGGGTTGGTGGAGTTGTAGTGCTTCTCCAGGCC 281 Query 132711 CAGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATT 132770 ||| |||||||| | ||| || |||||||||||||| || |||| ||| || Sbjct 280 CAGCGACACGAGCAGGCGGTCCGCGACGAACTCGATGTACTGGCTCATGAGGTCGGCGTT 221 Query 132771 AAGTCCCAGCAGACGCACCGGCAGCGCTTCGGTGA-GAAAGCGTTGCTCGATGGCGACCG 132829 | || | || ||||| |||||||| ||| || ||| | || ||||||| |||| | Sbjct 220 CATGCCGATGAGGCGCACGGGCAGCGCGTCGCAGATGAACTCCTT-CTCGATGACGACGG 162 Query 132830 CGTCGGTGACGATTTCCCTAACGCGCGCCGCGCTCGGCCG-TTGCACCAAATGC-----T 132883 ||||||||| ||| ||| |||||| | || |||| | ||| | ||| | Sbjct 161 CGTCGGTGATGATGTCCAGCACGCGCTC---GCGCGGCAGCTTGTGCTTGATGTAGCTGT 105 Query 132884 TGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGC 132943 || ||| || ||| || |||||| |||| ||||||||| | || ||||| ||||||| Sbjct 104 TGTACAGCAGGCAGGCGAAGTCGGTGTGCAGGCCCTCGTCGCGCGAGATGAGCTCGTTGC 45 Query 132944 TGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAA 132986 |||| || | ||||||||| | |||||| || |||||||| || Sbjct 44 TGAAGGTGAGGCCGGGCATCACGCCGCGCTTCTTGAGCCAGAA 2 >seq36 Length=60674 Score = 134 bits (148), Expect = 1e-26 Identities = 163/217 (75%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| || ||| || |||| |||||||| | | Sbjct 7038 ATGCAGATCTTCGTGAAGACTCTGACCGGCAAGACGATCGCCCTCGAGGTCGAGGCGAGC 7097 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCG-ACC 38361 |||| | | | |||| | || | || |||| ||||| ||||| || ||||||| ||| Sbjct 7098 GACACCATCGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAGGGCAT-CCCGCCGGACC 7155 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| ||||| | ||| ||||| ||||| || || | ||||| ||| ||||||| Sbjct 7156 AGCAGCGCCTCATCTTCGCTGGCAAGCAGCTCGAGGAGGGCCGCACGCTCGCGGACTACA 7215 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||| || ||||| | |||||||| | |||||||| Sbjct 7216 ACATTCAGAAGGAGTCCACGCTGCACCTCGTGCTGCG 7252 >seq257 Length=25438 Score = 129 bits (142), Expect = 6e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || ||||| || ||||| || ||| || | || || ||||| | | Sbjct 22456 ATGCAAATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCCCTGGAGGTGGAGGCGAGC 22397 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | || | || |||| ||||| ||||| || || | ||||| Sbjct 22396 GACACGATCGAGAACG-TGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCA 22338 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | || ||||| ||||| || || | ||||| ||| |||||||| Sbjct 22337 GCAGCGCCTGATCTTTGCTGGCAAGCAGCTCGAGGAGGGCCGCACGCTCGCGGACTACAA 22278 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||||| | |||||||| |||||||||| || | ||||| Sbjct 22277 CATCCAGAAGGAGTCCACGCTGCACCTGGTGCTGCGCCTGCGCGGCGG 22230 >seq2803 Length=585 Score = 127 bits (140), Expect = 2e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || ||||| || ||||| || ||| || | || || ||||| | | Sbjct 240 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCCCTGGAGGTGGAGGCGAGC 181 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | || | || |||| ||||| ||||| || || | ||||| Sbjct 180 GACACGATCGAGAACG-TGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCA 122 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | || || || |||||||| || | || || ||| |||||||| Sbjct 121 GCAGCGCCTGATCTTTGCTGGTAAGCAGCTGGAGGAGGGCCGTACGCTCGCGGACTACAA 62 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| ||||| |||||||||| ||||||| ||| || | |||||| Sbjct 61 CATCCAGAAGGAGTCGACGCTGCACCTGGTGCTCCGTCTGCGCGGCGGC 13 Score = 127 bits (140), Expect = 2e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || ||||| || ||||| || ||| || | || || ||||| | | Sbjct 468 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCCCTGGAGGTGGAGGCGAGC 409 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | || | || |||| ||||| ||||| || || | ||||| Sbjct 408 GACACGATCGAGAACG-TGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCA 350 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | || || || |||||||| || | || || ||| |||||||| Sbjct 349 GCAGCGCCTGATCTTTGCTGGTAAGCAGCTGGAGGAGGGCCGTACGCTCGCGGACTACAA 290 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| ||||| |||||||||| ||||||| ||| || | |||||| Sbjct 289 CATCCAGAAGGAGTCGACGCTGCACCTGGTGCTCCGTCTGCGCGGCGGC 241 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 38358 GACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGAC 38417 ||||| ||||| || || | || || || |||||||| || | || || ||| ||| Sbjct 582 GACCAGCAGCGCCTGATCTTTGCTGGTAAGCAGCTGGAGGAGGGCCGTACGCTCGCGGAC 523 Query 38418 TACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||||||||| ||||| |||||||||| ||||||| ||| || | |||||| Sbjct 522 TACAACATCCAGAAGGAGTCGACGCTGCACCTGGTGCTCCGTCTGCGCGGCGGC 469 >seq455 Length=15778 Score = 122 bits (134), Expect = 9e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || ||||| || ||||| || ||| || | || || ||||| | | Sbjct 237 ATGCAGATCTTTGTGAAGACGCTGACCGGCAAGACGATCGCCCTGGAGGTGGAGGCGAGC 178 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | || | || |||| ||||| ||||| || || | ||||| Sbjct 177 GACACGATCGAGAACG-TGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCA 119 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | || || || |||||||| || | || || ||| |||||||| Sbjct 118 GCAGCGCCTGATCTTTGCTGGTAAGCAGCTGGAGGAGGGCCGTACGCTCGCGGACTACAA 59 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| ||||| |||||||||| ||||||| ||| || | |||||| Sbjct 58 CATCCAGAAGGAGTCGACGCTGCACCTGGTGCTCCGTCTGCGCGGCGGC 10 >seq782 Length=7656 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || ||||| || ||||| || ||| || | || || ||||| | | Sbjct 7637 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCCCTGGAGGTGGAGGCGAGC 7578 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | || | || |||| ||||| ||||| || || | ||||| Sbjct 7577 GACACGATCGAGAACG-TGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCA 7519 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | || || || |||||||| || | || || ||| |||||||| Sbjct 7518 GCAGCGCCTGATCTTTGCTGGTAAGCAGCTGGAGGAGGGCCGTACGCTCGCGGACTACAA 7459 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||||| |||||||||| ||||||| ||| || | || || Sbjct 7458 CATCCAGAAGGAGTCGACGCTGCACCTGGTGCTCCGTCTGCGCGGTGG 7411 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500154031015680