Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20culicis_20[genbank_20GCA_5F000482145.1_202013-10-25] 3,002 sequences; 23,587,153 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq1372 329 4e-85 seq1 221 2e-52 seq154 145 1e-29 seq51 136 5e-27 >seq1372 Length=2752 Score = 329 bits (364), Expect = 4e-85 Identities = 765/1142 (67%), Gaps = 15/1142 (1%) Strand=Plus/Minus Query 7013 CCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATC 7072 || || | |||| ||| || |||| ||| ||||| || || ||||| |||||||| || Sbjct 1563 CCGGTCAGGATGAAGGCCTGCACCGCCGCGCCGTAGGCCACGGCCTCGTCGGGGTTGATG 1504 Query 7073 GTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGATT 7132 | || ||||| || || ||| || || || || | | || | || ||||| Sbjct 1503 CTCTTGTTCAGCTCCTTGCCGCCGAAGTAGTCGGAGACGAGGCTCTGCACCTTGGGGATG 1444 Query 7133 CGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAGTCT 7192 || || || || ||||| | || | || | ||| || || ||||| | ||| Sbjct 1443 CGGGTGGAGCCGCCGACGAGCACTACGTCGTGCACGGCGCGCTTGTCCATCTTGGCGTCG 1384 Query 7193 CGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTCCTCA 7252 || || || || | || ||||||| | ||| ||||| ||||| Sbjct 1383 GTCAGCACGCGCTCCACGGGCTGCACGGTGCTACGGAAGAGGTCACCGCACAGCTCCTCG 1324 Query 7253 AAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATTTCA 7312 || || || ||||| |||| | | ||| || ||| |||| | | || || || || Sbjct 1323 AAGCGCGCGCGGGTGATGGTGGACTGGAAGTCGACGTTGTCGAACAGCGCGTCGATCTCG 1264 Query 7313 ATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAA 7372 ||||| | || | | || || | ||| ||||| |||||||| || ||||| || | Sbjct 1263 ATGGTCGCCTGGGTGGCGGACGACAGCGTGCGCTTGGCGCGCTCGCAGGCCGTGCGCAGG 1204 Query 7373 CGACGAAGGGCACGCGGGTTACCGGAAATATCTTT---CTTATGTTTACGTTTAAACTCT 7429 || || ||||| || |||| ||| | || || ||| | || || || ||||| Sbjct 1203 CGGCGCAGGGCGCGGTGGTTGTTGGAGAGGTCCTTGCCCTTGTTCTTGCGCTTGAACTCG 1144 Query 7430 TCAGAGAAGT-GTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCC 7488 || | |||| || || | || | |||||| || || || || | ||| ||||| || Sbjct 1143 TCGGCGAAGAAGTTGACG-AGGCGGTTATCGAAGTCCTCGCCGCCGAGGTGGGTATCACC 1085 Query 7489 CGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGT 7548 |||||| |||||||| || ||||| || || || || | | || || ||||| ||||| Sbjct 1084 CGCGGTGGCTTTGACCTCGAAGATGCCGCCGTCGATCGTGAGCAGCGTCACATCGAACGT 1025 Query 7549 ACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACC 7608 ||| || || || || || ||||| |||||| | || | ||| | ||| || ||||| Sbjct 1024 ACCGCCGCCGAGATCGAAGATGAGCACGTTCTTCTCCTTGTCGTCACCCTTGTCCAGACC 965 Query 7609 GTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGG-CCAGCAA 7667 ||| ||||| || ||||| || || || || || || || || || ||| | || || | Sbjct 964 GTAGGCGATGGCGGCCGCGGTGGGCTCGTTGATGATGCGGAG-CACCTCAAGACCCGCGA 906 Query 7668 TAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTA 7727 | || | || || || || || || || || || ||||| |||||||| ||||| || | Sbjct 905 TCGTGCCGGCGTCCTTGGTGGCCTGGCGCTGGGAGTCGTTGAAGTAGGCGGGGACGGTCA 846 Query 7728 CGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAA 7787 |||| || | | |||| | ||| ||||| || | ||||||| || ||||| ||| | Sbjct 845 CGACGGCCTTCTTGACCTGCTTGCCGAGGTAGGCCTCCGCGACCTCCTTCATCTTGAGCA 786 Query 7788 GAACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTCGTT-TCACCGTTAAAATCAACT 7846 | ||||| || ||||| || | || || || | ||| || |||| || | || Sbjct 785 GCACCATGGAGCTGATCTCCTCGGGCGTGAAG-GTCTTGTTCTCGCCGTGGAACTGCACC 727 Query 7847 TCAATCATGGGTTTATCCGCAGCACCGGGGATAACCTTATACGACCAATCTTTCATATCG 7906 | | ||||| || || | || || | ||| | | ||| | ||||| ||| Sbjct 726 TGCACGATGGGCAGGTC-GC--CCTTGGCGACGATCTTGAAGGGCCAGTGCTTCATGTCG 670 Query 7907 TCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTG 7966 || |||| |||| ||||| | ||||| || ||||| || || || || ||| Sbjct 669 CTCTGCACCTCGGAGTCCTTGAACTTGCGGCCGATCAGGCGCTTGGCGTCGAAGACGGTG 610 Query 7967 TTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTT 8026 || | |||||||||||| |||||||| || || || ||||| ||||| || Sbjct 609 TTGTGGGGGTTCATGGCGACCTGGTTCTTGGCGGCATCGCCGATCAGACGCTC---CGAG 553 Query 8027 TCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCT 8086 || || || |||||||| || |||||||| || || || | ||||||||| || || || Sbjct 552 TCGGTGAAGGCGACGTAGGAGGGGGTCGTGCGGTTACCCTAGTCGTTCGCGATGATCTCC 493 Query 8087 ACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAATCAATACCGATT 8146 ||||| ||||| ||||| || || ||||| || || || || || | ||||||||| || Sbjct 492 ACGCGCTCGTTCTGCCACACACCCACGCAGGAGTAGGTCGTGCCCAGATCAATACCAATA 433 Query 8147 GC 8148 || Sbjct 432 GC 431 >seq1 Length=158194 Score = 221 bits (244), Expect = 2e-52 Identities = 467/693 (67%), Gaps = 14/693 (2%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| || |||||||| | ||| || || || ||||| || ||||| || || | ||| Sbjct 85127 TCGAAGTCCTCACCACCGAGGTGGGTGTCACCTGCGGTGGCCTTGACCTCGAACACACCG 85068 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | || || | | || || ||||| |||||||| || || || || || ||||| ||| Sbjct 85067 CTGTCGATCGTGAGCAGCGTCACATCGAACGTACCGCCGCCGAGATCGAAGATGAGCACG 85008 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 ||| | | || | |||| || | ||||| ||||| || ||||| || || || Sbjct 85007 TTCTTCTGCTCCT------TCTTGTCCATGCCGTAGGCGATGGCGGCCGCGGTGGGCTCG 84954 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCC-GCATCTTTCGTCGCTTGTCG 7695 || || || || || || ||||| || || | |||| || || ||||| || || || Sbjct 84953 TTGATGATGCGCAGCACGTCGAGGCCCGCGAT-GATGCCAGCGTCCTTCGTGGCCTGGCG 84895 Query 7696 TTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAG 7755 || || ||||| |||||||||||||| || ||||| || | || || |||| |||||| Sbjct 84894 CTGGGAGTCGTTGAAGTAGGCCGGGACGGTCACGACTGCTTTGGTTACCTTCTCACCGAG 84835 Query 7756 ATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGC 7815 |||| || || | |||||||| || || |||||||| ||||| || | || Sbjct 84834 GTACGCCTCGGCAGTCTCTTTCATCTTCACGAGCACCATCGAGCTGATCTCCTCGGGCGA 84775 Query 7816 AAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGG 7875 || || || || || | | || || | | || || || | | ||| Sbjct 84774 GAAGGACTTGGTGTCGCCCTGGTACTCCACCTGCACCACAGGCTTGCCTTCCTTCACGG- 84716 Query 7876 GATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCT 7935 | ||||| | | ||| | ||||| ||| || | | |||| ||||| | Sbjct 84715 --TCACCTTGAAGGGCCAGTGCTTCATGTCGCTCTGCAGGTCGGGGTCGTCGAACTTGCG 84658 Query 7936 TCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTT 7995 ||||| | ||||| || || || | ||||| | ||||||||| || | |||||||| Sbjct 84657 GCCGATCATGCGCTTCGCGTCGAAGATGGTGTTGTGGGGGTTCATCGCAATCTGGTTCTT 84598 Query 7996 CGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGT 8055 ||| || || || | ||||| || | || || || |||||||| || || ||||| Sbjct 84597 CGCGGCATCACCCACGAGACGCTC---CGTCTCGGTGAAGGCGACGTAGGAGGGCGTCGT 84541 Query 8056 TCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCA 8115 || || || ||||||||||| || || || || ||||||| | |||| |||||||| Sbjct 84540 GCGGTTACCCTGGTCGTTCGCGATGATCTCCACCTGGTCGTTCTTGAAGACACCGACGCA 84481 Query 8116 CGAATACGTTGTTCCTAAATCAATACCGATTGC 8148 || || || || || | ||||| || || || Sbjct 84480 GGAGTAGGTCGTGCCGAGGTCAATGCCAATCGC 84448 >seq154 Length=34185 Score = 145 bits (160), Expect = 1e-29 Identities = 165/221 (75%), Gaps = 3/221 (1%) Strand=Plus/Minus Query 7928 AACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTT 7987 ||||| | ||||| || ||||| || || || || ||||| | |||||||||||| Sbjct 34143 AACTTGCGGCCGATCAGGCGCTTGGCGTCGAAGACGGTGTTGTGGGGGTTCATGGCGACC 34084 Query 7988 TGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGAT 8047 |||||||| || || || ||||| ||||| || | | || || |||||||| || Sbjct 34083 TGGTTCTTGGCGGCATCGCCGATCAGACGCTCCGAGT---CGGTGAAGGCGACGTAGGAG 34027 Query 8048 GGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACG 8107 |||||||| || || || ||||||||||| || || || ||||| ||||| ||||| || Sbjct 34026 GGGGTCGTGCGGTTACCCTGGTCGTTCGCGATGATCTCCACGCGCTCGTTCTGCCACACA 33967 Query 8108 CCGACGCACGAATACGTTGTTCCTAAATCAATACCGATTGC 8148 || ||||| || || || || || | ||||||||| || || Sbjct 33966 CCCACGCAGGAGTAGGTCGTGCCCAGATCAATACCAATAGC 33926 >seq51 Length=55551 Score = 136 bits (150), Expect = 5e-27 Identities = 198/280 (71%), Gaps = 6/280 (2%) Strand=Plus/Plus Query 7535 GAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTG 7594 || ||||| |||||||| || || || ||||| | ||| | |||| | || | | ||| Sbjct 30513 GAGACATCGAACGTACCGCCGCCGAGATCAAAGACGAGGATGTTCTTCTCACCAGCCTTG 30572 Query 7595 TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAG 7654 || ||| ||||||||||| || || ||||| || || || || || || | | | Sbjct 30573 TT------GAGGCCGTACGCGATGGCAGCGGCCGTCGGCTCGTTGATGATGCGGACAACG 30626 Query 7655 TTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAG 7714 || || ||||| || || | ||||| || |||| || || |||| ||||| |||||| Sbjct 30627 TTGAGTCCAGCGATTGTACCGGCATCCTTGGTCGACTGGCGCTGCGCGTCGTTGAAGTAG 30686 Query 7715 GCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCT 7774 || || ||||| || || |||| | | || |||| || ||||| | ||| ||||| || Sbjct 30687 GCGGGAACCGTCACAACGGCGTTCTTTACCTTCTCGCCAAGATAGGTTTCTGCGATCTCC 30746 Query 7775 TTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCG 7814 ||||| || || |||||||| || ||||| |||| Sbjct 30747 TTCATCTTCTGGAGCACCATCGAGCTGATTTCTTCCGCCG 30786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635108966641680