Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20culicis_20[genbank_20GCA_5F000482145.1_202013-10-25] 3,002 sequences; 23,587,153 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq2 154 2e-32 seq1609 111 2e-19 >seq2 Length=121565 Score = 154 bits (170), Expect = 2e-32 Identities = 882/1392 (63%), Gaps = 26/1392 (2%) Strand=Plus/Minus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 || ||| ||||| || |||| || ||||| || ||||| || | || | || || Sbjct 26621 CCGCAGCACATGATCCTGCGCGTGGCGATTGGCATCCACGGCAAGGACCTGGAGCGCGTC 26562 Query 111672 TTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTTC 111731 | |||||| ||||| | || | |||| ||||| || || || |||||| Sbjct 26561 CGCAACACATACATGCTCATGTCGCAGGGCTTCTTCACGCACGCCACCCCCACGCTCTTC 26502 Query 111732 AACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGAT 111791 ||||| ||||| || | || || ||| | || ||||| | || | ||||| || Sbjct 26501 AACGCCGGTACCCCCAAGCCGCAGATGAGCTCGTGCTTCCTGGTCGCGATGAAGGACGAC 26442 Query 111792 TCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGGT 111851 ||| | ||||| |||| ||| || | || || ||| ||| ||| |||||| Sbjct 26441 AGCATCGAGGGCATCTACGACACGCTGAAGGAGTGCGCCGTGATCAGCAAGGCGGCTGGC 26382 Query 111852 GGTATCGGGATGCACATCCATGATGTCAGAGCCAACA--AGTCTCGTATTAGAGGTACAA 111909 || || || || || ||||| | || | || | || | || || || | Sbjct 26381 GGCATTGGCATCCATATCCACAACATCCGCGCGGCCGGCAGCTAC--ATCGCGGGCACCA 26324 Query 111910 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 111969 | || || | || | || || ||| | ||||| | ||| ||| || ||||| | Sbjct 26323 ACGGCACGTCGAACGGCCTCATGCCGATGATCCGCGTGTGGAACAACACGGCCCGCTACG 26264 Query 111970 TAAACCAAGCTGGGCGT---CGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACG 112026 | | || | || || |||||||| | |||| | || || ||||| ||||||| Sbjct 26263 TTGATCAGGGCGGCGGTAAGCGCAAGGGCGCCTTCGCCATGTACCTCGAGCCGTGGCACG 26204 Query 112027 CGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTGCC 112086 | || ||| | |||||||| || | |||| || | ||||| ||| | Sbjct 26203 CCGACATCTTCGAGTTCCTGCTCATGAAGCGCAACACTGGCAAGGAGGACCAGCGCGCGC 26144 Query 112087 GCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAG-T 112145 |||| ||||||| ||| |||||||| || || |||||||||||| | | ||| ||| | Sbjct 26143 GCGACCTCTTCTACGCGCTCTGGATCCCGGACCTCTTCATGAAGCGCG-TGAAGAGTGAG 26085 Query 112146 GGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGA-TGCCGTGGGTGA 112204 ||||| ||| | ||| | || ||| | | ||||| ||| ||| |||| || || Sbjct 26084 GGCAAGTGGACGCTCATGGACCCCAACACGACGCCCGGCCTCAGCGACTGCC-ACGGCGA 26026 Query 112205 GGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGT-CGGGCGACTGCGACGGTGC 112263 |||||| || |||||| |||||| | | || |||| | || || || | Sbjct 26025 GGAGTTCGAGAAGCTCTACGAGGGGTACGAAGCGAAGGGTATGGGCATCCGC-ACCGT-C 25968 Query 112264 CAGCTGC-CGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATAT 112322 ||| || || ||||| || ||||| ||||||| | ||| || || || | Sbjct 25967 CAGGCGCAGGAGCTGTGGTTTGCCATTCTGGAGTCTCAGATCGAAACGGGCGTGCCGTTC 25908 Query 112323 ATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAG 112382 ||||| ||||| || ||||| ||| ||| || || |||| | || |||||| Sbjct 25907 ATGCTCTACAAGGATGCCTGCAACGCCAAGTCGAACCAGCAGAACCTCGGCACCATCAAG 25848 Query 112383 AGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGT 112442 | || ||||| || || || ||| | || | || || || |||||||| ||||| Sbjct 25847 TGCTCTAACCTGTGCACGGAGATCATCGAGTACACCTCGAAGGACGAGACGGCGGTGTGC 25788 Query 112443 AACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGATTAT 112502 ||||| || || ||||| || |||||| |||| | | |||| || ||||| | Sbjct 25787 AACCTGGCCTCGATCGCGCTGTCCAAGTTTGTGAACCGCGAGAAGAACGAGTTTGACCAC 25728 Query 112503 GAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTGATAGA 112562 | ||| | || || ||||| |||| | ||||| ||| | || || || || Sbjct 25727 CAGCGGCTCTATGAGGTGACGAAGGAGATCACCTACAACCTCAACCGTGTCATAGACCGA 25668 Query 112563 AATTTTTACCCCGTTGAGACTG-CTCGTAAATCTAATATGAGACACCGTCCAATTGGTCT 112621 || | |||||||| ||||| | | | | | || ||| | ||||| || || || || Sbjct 25667 AACTACTACCCCGTCGAGACCGCCGAGCGCAGC-AACATGCGCCACCGCCCCATCGGCCT 25609 Query 112622 CGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATT--TGATTCCGAC 112679 ||| || || || ||||| || | ||| || || | | | || || ||| Sbjct 25608 CGGCGTGCAGGGCCTCGCAGACGCCTTCTGCCTGCTCCGGCTCTCCTTCACGAGCCCG-- 25551 Query 112680 GAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTTGAGGCG 112739 || ||| || |||| | | || || ||||| || || ||| ||| | ||| | Sbjct 25550 GAGGCGCAGCGCCTCAACGAGGACATCTTCGAGACCATCTACTACGGCGCGGTGGAGTCC 25491 Query 112740 AGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCA 112799 ||| |||| | ||| || || || || || || || |||| || || || Sbjct 25490 TCCGTGGACCTGGCGGCGGTGGAGGGCCCCTACGAGACGTTCCAGGGCAGCCCCGCGTCG 25431 Query 112800 CAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGA-GACCAAG---CTTCACTACGACTG 112855 | ||| |||| || || || ||| |||||| || | | ||| | || ||||| Sbjct 25430 AAGGGGCTGCTGCAGTTCGACCTGT-GGAAGGAGACGCCGAAGAGCGGCCGCTGGGACTG 25372 Query 112856 GGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCACC 112915 || || | ||| | ||| || |||| || | || ||| || | | || || Sbjct 25371 GGCGGCCTTGAAGAAGCGCGTCGTGGAGGTTGGCATGCGCAACTCGCTGCTCCTCGCGCC 25312 Query 112916 AATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACAC 112975 ||||| || |||||||| | || || |||| || || || ||||| || |||| ||| Sbjct 25311 GATGCCGACCGCCTCCACGTCGCAGATTCTGGGCAACAACGAGTGCTTCGAGCCCTTCAC 25252 Query 112976 GACGAACATCTA 112987 | |||||||| Sbjct 25251 CTCCAACATCTA 25240 >seq1609 Length=2085 Score = 111 bits (122), Expect = 2e-19 Identities = 109/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 102180 GAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCT 102239 ||||| ||| ||| || ||| || ||||| ||||||||||| || ||||||||| | Sbjct 1140 GAGCGGCTCATCGGCTTCGCGGCCGTCGAGGGCATCTTCTTCTCCGGCTCCTTCTGCTCC 1199 Query 102240 ATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATC 102299 || | |||||||||||||| || | ||||| || ||| |||| ||||||||| ||| Sbjct 1200 ATCTTCTGGCTCAAGAAGCGCGGCGTGATGCCCGGCCTCACCTTCAGCAACGAGCTCATC 1259 Query 102300 TCTCGTGACGAGGGACTCCAC 102320 || || |||||||| || ||| Sbjct 1260 TCGCGCGACGAGGGCCTGCAC 1280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620719106641440