Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20culicis_20[genbank_20GCA_5F000482145.1_202013-10-25] 3,002 sequences; 23,587,153 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq2 178 2e-39 >seq2 Length=121565 Score = 178 bits (196), Expect = 2e-39 Identities = 672/1043 (64%), Gaps = 35/1043 (3%) Strand=Plus/Plus Query 106280 TCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGA-CTTTCGCGC 106338 || ||||| || || || || | || || || | ||| ||||| || | ||| || Sbjct 25588 TCTGCGAGGCCCTGCACGCCGAGGCCGATGGGGCGGTGGCGCATGTTGCTGCGCTCG-GC 25646 Query 106339 AGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTT 106398 ||||| ||||| || | |||| ||| ||||| ||||| || || | ||| | ||| Sbjct 25647 GGTCTCGACGGGGTAGTAGTTTCGGTCTATGACACGGTTGAGGTTGTAGGTGATCTCCTT 25706 Query 106399 TGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGG 106458 || | |||| || | | ||||| | |||| || ||| |||| | Sbjct 25707 CGTCACCTCATAGAGCCGCTGGTGGTCAAACTCGTTCTTCTCGCGGTTCACAAACTTGGA 25766 Query 106459 AAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAAT 106518 || ||||| || |||| ||||| || |||||||| ||||| |||||||| | || Sbjct 25767 CAGCGCGATCGAGGCCAGGTTGCACACCGCCGTCTCGTCCTTCGAGGTGTACTCGATGAT 25826 Query 106519 TTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTT 106578 || || |||| ||| || | ||| || || || | |||| ||||| ||| ||| Sbjct 25827 CTCCGTGCACAGGTTAGAGCACTTGATGGTGCCGAGGTTCTGCTGGTTCGACTTGGCGTT 25886 Query 106579 GCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGC 106638 ||| |||||||||||||||||| | ||| ||||| || |||| |||| ||||| || Sbjct 25887 GCAGGCATCCTTGTAGAGCATGAACGGCACGCCCGTTTCGATCTGAGACTCCAGAATGGC 25946 Query 106639 CTTCCACA-CATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTG 106697 ||||| | | ||| |||| || || | || || |||| ||| |||||| Sbjct 25947 AAACCACAGCTCCTGCGCCTGG-ACGGTGCGGATGCCCATACCCTTCGCTTCGTACCCCT 26005 Query 106698 TGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGAC 106757 |||||| || |||||||| || |||| ||| || || | | ||| || Sbjct 26006 CGTAGAGCTTCTCGAACTCCTCGCCGTGGCAGTCGCTGAGGCCGGGCGTCGTGTTGGGGT 26065 Query 106758 AGAAAAGAGACCA-TTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCAC 106816 | || | ||| ||| || | ||| || || ||||||||||| ||||| || ||||| Sbjct 26066 CCATGAGCGTCCACTTGCCCTCACTCTTC-ACGCGCTTCATGAAGAGGTCCGGGATCCAG 26124 Query 106817 AGGGATGAAAAGAGATCTCTACACCGAGC-CTCTTCGTCACCTTGGTTGAGTCGTAACTC 106875 || | | ||||| || | || || || || | ||||| | || | || Sbjct 26125 AGCGCGTAGAAGAGGTCGC----GCGCGCGCTGGTC--CTCCTTGCCAGTGTTGCGCTTC 26178 Query 106876 A-----AGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCC 106930 | |||||||| | ||| || |||||||| ||||| || || | |||| | ||| Sbjct 26179 ATGAGCAGGAACTCGAAGATGTCGGCGTGCCACGGCTCGAGGTACATGGCGAAGGCGCCC 26238 Query 106931 TTTCG---ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATT 106987 || || || || | |||| || ||||| || ||| ||| | ||||| | ||| Sbjct 26239 TTGCGCTTACCGCCGCCCTGATCAACGTAGCGGGCCGTGTTGTTCCACACGCGGATCATC 26298 Query 106988 GGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTA-TTG------GC 107040 || || | || | || || || || || || ||| || || || Sbjct 26299 GGCATGAGGCCGTTCGACGTGCCGTTGGTGCC-------CGCGATGTAGCTGCCGGCCGC 26351 Query 107041 TCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTC 107100 | | | ||||| || || ||||| || |||||| ||| ||| || ||||| Sbjct 26352 GCGGATGTTGTGGATATGGATGCCAATGCCGCCAGCCGCCTTGCTGATCACGGCGCACTC 26411 Query 107101 CGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACT 107160 | | || || | ||||| || | ||| ||| ||||| | |||| |||||||| Sbjct 26412 CTTCAGCGTGTCGTAGATGCCCTCGATGCTGTCGTCCTTCATCGCGACCAGGAAGCACGA 26471 Query 107161 GGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACAT 107220 | ||||||||| | || ||||| || |||||||| || || || ||||| |||| | Sbjct 26472 GCTCATCTGCGGCTTGGGGGTACCGGCGTTGAAGAGCGTGGGGGTGGCGTGCGTGAAGAA 26531 Query 107221 ACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCC 107280 || || ||||| |||||| | ||| || | ||| | ||||||||||| Sbjct 26532 GCCCTGCGACATGAGCATGTATGTGTTGCGGACGCGCTCCAGGTCCTTGCCGTGGATGCC 26591 Query 107281 GATGGCCACACGCATAAACATGT 107303 || ||||| |||| | ||||| Sbjct 26592 AATCGCCACGCGCAGGATCATGT 26614 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589958660970480