Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20culicis_20[genbank_20GCA_5F000482145.1_202013-10-25] 3,002 sequences; 23,587,153 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq518 136 3e-27 >seq518 Length=13848 Score = 136 bits (150), Expect = 3e-27 Identities = 398/609 (65%), Gaps = 12/609 (2%) Strand=Plus/Plus Query 29790 GAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTG 29849 |||||| || ||||| |||||||| | | ||| ||||| ||||| ||||| ||||| Sbjct 5415 GAGCTGCTGCTGCAGCGCGTCCACGTGGTTCTTGTACACGTGCGCGTCGCCCAGCGTGTG 5474 Query 29850 GACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTA 29909 || | ||| || || | ||||| || | | || || | | || |||| | ||| Sbjct 5475 GATGAGCTCCCCGGGCTTCAGCCCCGTCGCCTTGGCGATGAGGATAGTCAGGAAGGCGTA 5534 Query 29910 GCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACA 29969 ||||||||| ||||| || ||||| |||||||| | | |||||| ||| || Sbjct 5535 CGAGGCGATGTTGAAGGGCACACCGAGGCCCATGTCGCAGCTGCGCTGGTACAGCATGCA 5594 Query 29970 CGAGAGCTC-TCCGTC-----GCTCACGTAAAACTGACACATGGTGTGGCACGGAGGAAG 30023 ||||| | ||| | ||||||| ||||| | | | ||||||||| || || Sbjct 5595 GCTCAGCTCCTGCGTGTTGGGGTTCACGTAGAACTGGCCGAGGAGGTGGCACGGCGGCAG 5654 Query 30024 AGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGG 30083 ||||| | | | | |||||||| || | || | || | ||| |||| Sbjct 5655 CGCCATCTTGTCAAGCGCGGCCGGGTTCCACGCCGTGAAGAGCAGCCGGCGGTCG-CTGG 5713 Query 30084 GTTGTTCCTGATGAGGTCCACGGCGTTTTGC---AGCTGATCCACCCCCATCCCCGAGTA 30140 | | || | |||| | || || | || | ||| || || ||| | || ||| Sbjct 5714 GAT--TCGTCTTGAGCGTCTCGACGATGCGCTTGATCTGGTCGACGCCCTTGCCGTCGTA 5771 Query 30141 GTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGG 30200 || | | | | |||||| || || ||||| || | ||||||||| ||||| || || Sbjct 5772 GTTGTCGTTGAAGGACGTGTAGTCGGCGCCGAAGTGGCGCCACTGGAAGCCGTAGACGGG 5831 Query 30201 TCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACC 30260 |||||||| |||||| |||| || ||| | |||| | ||| | | | || Sbjct 5832 CCCCAGGTCCATCTCTTCGTAGTGCGTGAGGCCGCGGCTGTCGAGGAAGGCGCGGCTGCC 5891 Query 30261 GTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCT 30320 |||| |||||||||| | | ||||| || | |||| || | ||| || ||| | Sbjct 5892 GTTGTCGTCCCAGATGTGGATGCCCTTGTCCGCGAGCAGCTTCGCGTTGGTCTCCCCGCG 5951 Query 30321 GACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAG 30380 | |||||| | ||||||||| ||| | ||| ||||| | ||| ||||||||||| Sbjct 5952 CAGGAACCAGATGAGCTCCTCCGACACGCCGCGCCAGAAGACGCGCTTCGTCGTGAGGAG 6011 Query 30381 GGGAAACTG 30389 || | ||| Sbjct 6012 CGGCAGCTG 6020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408602649958946