Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20culicis_20[genbank_20GCA_5F000482145.1_202013-10-25] 3,002 sequences; 23,587,153 total letters Query= NC_019405.1 Length=215710 Score E Sequences producing significant alignments: (Bits) Value seq45 188 1e-42 >seq45 Length=57489 Score = 188 bits (208), Expect = 1e-42 Identities = 520/784 (66%), Gaps = 41/784 (5%) Strand=Plus/Minus Query 136638 CATGGCCT-AGCCCTTCACGCAGAGGACTTGCTTGAGGGTGTGGACGATGTCCACGAGGT 136696 ||| |||| | |||||||| || || | ||| ||||| ||| | ||||| || | Sbjct 13014 CATCGCCTTATCCCTTCACACACAGTATTTGATTGAGCACTGCGACCACCTCCACAAGCT 12955 Query 136697 CCTTCTGGGCCTCCATGACCGCGTCGATGTCCTTGTAGGCCATCGGGATTTCGTCGATCA 136756 ||| || || | |||||| || ||||||||||||||||| || |||| |||| || Sbjct 12954 CCTCTTGTGCATGCATGACGGCATCGATGTCCTTGTAGGCGGCGGGTGTTTCATCGAGCA 12895 Query 136757 CGCCAGCGTCCTTGCGGCACTCCACGCCCTCGGTGGCCTTGATCTGGTCCTCCAGGGTGA 136816 |||| |||||||||||||||||||| |||| |||||| | ||||| |||| |||| Sbjct 12894 CGCCGGCGTCCTTGCGGCACTCCACTCCCTGAGTGGCCGCCACGTGGTCGGCCAGCGTGA 12835 Query 136817 AG-GTCGCCTTGGCCTGGGTCCGCGACATCGTCCGGCCCGCGCCGTGCGAGCACGAGCAG 136875 || | ||| | | | | || || | || || || |||||||| ||||| || ||| Sbjct 12834 AGCGGCGCTTCGTCTCGCCTCTGCTGAAGCG-GCGCCCGGCGCCGTGGGAGCAGGAACAG 12776 Query 136876 AACGAGTCCGCATTGCCCTTGCCGCGCACGATGTAGGACTTGGCCCCCATCGAGCCGGGG 136935 | | | |||||||| |||||||| |||||| || ||||| || |||||| Sbjct 12775 TAGCTGCTCATGTTGCCCTTCCCGCGCACAATGTAGCTGCGCGCGCCCATGGACCCGGGG 12716 Query 136936 ATGATCCCGAACTGGTC-CTTCTGCGCCGACACCGCGCCCTTGCGGGTCACGAAGACCCA 136994 | || | ||| || | | | ||| || || ||||||||||| || | | || Sbjct 12715 ACGACCGCGAGCTCGCCGCGCCTG-GCGGAGGTGGCGCCCTTGCGAGTGAGCCACACGGC 12657 Query 136995 CT-CGTCGAAGTGGAATTC--------CTTCTGGACGTAGTTGTGGTGGCAGTTCACCGC 137045 || | ||| |||| || | || ||||||||||||||||||||||| || Sbjct 12656 CTCCCCCGACGTGGCATCCACCACGAATCGCTCCACGTAGTTGTGGTGGCAGTTCACGGC 12597 Query 137046 TTCCTTG---TCCGTCTTGA-----ACGGCGGCAGGCCCGACGC-CCGCATGGCCTCCAG 137096 | | | ||| || || |||| | ||| | ||| |||| ||| ||||| Sbjct 12596 ATGCGCGCCATCCACCTCGAATGCGACGGACGGGGGCAGGGCGCGGCGCAGGGCGTCCAG 12537 Query 137097 GACCCGGACCATCATCATCTCGCGGTTGATCCGCGCGAAGTCCTGGCCCCAGGCGACGGC 137156 || ||||||||| | ||||| | ||| || ||| |||| | || || Sbjct 12536 CACAAACGCCATCATCAACCGTCGGTTCCACATCGCATAGGTCTGTGCCCACTCCACCGC 12477 Query 137157 TTCCACGTAGTCGTGGAACT--CCGGCTCGCCTTCGCAGAGCCAAGCAAGGTCCTTGTCC 137214 | | ||| || ||| | ||| ||| || ||| | || |||||||||| | Sbjct 12476 GGCGATGTACTCCGTGAAGTGGACGG--TGCCCTCTGTGAGGTAGGCGAGGTCCTTGTGC 12419 Query 137215 AGCGGCTTGCGCCCGTCA-CGACGCAGCATCATCTCCTTGGCCTTCTCGATGAAGATGCG 137273 || || || || | || || | | ||| || || |||| | ||| || ||| Sbjct 12418 GGCAGCGTGTGCAC--CAGCGCCCC--CATGTCCTTCTGGGCCAGAGCAATGTAGGTGCT 12363 Query 137274 GCCGATGGTGTTGCCGACGCCGCGCGAGCCCGAGTGGAGCATCACCCAGACGCGCT---- 137329 ||||||| ||| || | |||||||| |||||||| ||||||||||| ||| ||| Sbjct 12362 GCCGATGCGGTTACCAATCCCGCGCGACCCCGAGTGCAGCATCACCCACACGTGCTGCTG 12303 Query 137330 -----GGTCCTCGTCGAGGCAGACCTCGATGAAGTGGTTGCCGCCGCCCAGGGTGCCCAG 137384 |||| | || ||||| ||||||||||| ||||| || ||| || ||||| || Sbjct 12302 AATGGGGTCGTTATCCAGGCACACCTCGATGAAATGGTTCCCAGTGCCGAGCGTGCCGAG 12243 Query 137385 TTGG 137388 ||| Sbjct 12242 GTGG 12239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 690118102346400