Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20culicis_20[genbank_20GCA_5F000482145.1_202013-10-25] 3,002 sequences; 23,587,153 total letters Query= NC_019406.1 Length=279967 Score E Sequences producing significant alignments: (Bits) Value seq45 104 4e-17 >seq45 Length=57489 Score = 104 bits (114), Expect = 4e-17 Identities = 281/420 (67%), Gaps = 29/420 (7%) Strand=Plus/Minus Query 168270 TAACCCTTGACGCACAACACCTGCTTGAGGGTGGCGACGATCTCCACCATTTCTTCCTGG 168329 || ||||| || |||| | || ||||| ||||| | |||||| | || || || Sbjct 13006 TATCCCTTCACACACAGTATTTGATTGAGCACTGCGACCACCTCCACAAGCTCCTCTTGT 12947 Query 168330 GCCGCCATGACGAGTTCGATCGGCTTGTAAGCCTTCGGCGTCTCGTCGATCACGCCTTCG 168389 || ||||||| ||||| |||||| || || || || |||| |||||| || Sbjct 12946 GCATGCATGACGGCATCGATGTCCTTGTAGGCGGCGGGTGTTTCATCGAGCACGCCGGCG 12887 Query 168390 TCCTTGCGGCACTCGACGCCCTTCGTGGCTTCGACGTGCTCGTCCAG---GGAGACGAGC 168446 |||||||||||||| || |||| ||||| | ||||| ||| |||| | || | || Sbjct 12886 TCCTTGCGGCACTCCACTCCCTGAGTGGCCGCCACGTGGTCGGCCAGCGTGAAGCGGCGC 12827 Query 168447 TTC--TTCGCC---GCCGAACGCGACATGACGCGGCCGGCGCCGTGGCTGCACGAGCAGA 168501 ||| ||||| || ||| ||| ||| |||||||||||| ||| || ||| Sbjct 12826 TTCGTCTCGCCTCTGCTGAA-GCG-------GCGCCCGGCGCCGTGGGAGCAGGAACAGT 12775 Query 168502 AGGCG-TCAGCGTGGCCCTTGCCGCGCACGATGAACGACTTGGCGCCCATCGAACCCGGA 168560 || | ||| || |||||| |||||||| ||| | |||||||| || || || Sbjct 12774 AGCTGCTCA-TGTTGCCCTTCCCGCGCACAATGTAGCTGCGCGCGCCCATGGACCCGGGG 12716 Query 168561 ATGATGCCGAGTTCGTC-CTTCTGCGCCGACACCGCGCCCTTGCGGGTCACGAAGATGTC 168619 | || |||| ||| | | ||| || || ||||||||||| || | | | | | Sbjct 12715 ACGACCGCGAGCTCGCCGCGCCTG-GCGGAGGTGGCGCCCTTGCGAGTGAGCCACACGGC 12657 Query 168620 CT-CGCCGAAGTGGCGT--TCCTTG------TTGACGTAGTTGTGGTGACAGTTCACCGC 168670 || | |||| ||||| | || | | |||||||||||||| |||||||| || Sbjct 12656 CTCCCCCGACGTGGCATCCACCACGAATCGCTCCACGTAGTTGTGGTGGCAGTTCACGGC 12597 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 895732786365840