Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20culicis_20[genbank_20GCA_5F000482145.1_202013-10-25] 3,002 sequences; 23,587,153 total letters Query= NC_019408.1 Length=223720 Score E Sequences producing significant alignments: (Bits) Value seq45 95.1 2e-14 >seq45 Length=57489 Score = 95.1 bits (104), Expect = 2e-14 Identities = 431/667 (65%), Gaps = 46/667 (7%) Strand=Plus/Minus Query 139505 GCGGCACTCGACGCCTTCGGTCGCCTTGATCTGGTCTTCCAGCGTGAAGGCGGC-CTTGG 139563 ||||||||| || || | || ||| | ||||| ||||||||||| |||| ||| | Sbjct 12881 GCGGCACTCCACTCCCTGAGTGGCCGCCACGTGGTCGGCCAGCGTGAAG-CGGCGCTTCG 12823 Query 139564 ---CGGCGGTGCGCGACATGGTCCGCCCCGCGCCGTGCGAGCACGAGCAGAACGAGTCGG 139620 || | ||| || || ||||| |||||||| ||||| || ||| | | Sbjct 12822 TCTCGCCTCTGCT-GAAGCGG--CGCCCGGCGCCGTGGGAGCAGGAACAGTAGCTGCTCA 12766 Query 139621 CGTTGCCCTTGCCGCGCACGATGTAGGACTTGGCCCCCATCGAGCCGGGGATGATGCCGA 139680 ||||||||| |||||||| |||||| || ||||| || ||||||| || ||| Sbjct 12765 TGTTGCCCTTCCCGCGCACAATGTAGCTGCGCGCGCCCATGGACCCGGGGACGACCGCGA 12706 Query 139681 ACTGGTC-CTTCTGAGCCGACACCGCGCCCTTGCGGGTCACGAAGACCCACTCGTC-GAA 139738 || | | | ||| || || ||||||||||| || | | || ||| | || Sbjct 12705 GCTCGCCGCGCCTG-GCGGAGGTGGCGCCCTTGCGAGTGAGCCACACGGCCTCCCCCGAC 12647 Query 139739 GTGGAA--CTCCTT------CTGGACGTAGTTGTGGTGGCAGTTCACCGCTTCCTTG--- 139787 |||| | | || || ||||||||||||||||||||||| || | | | Sbjct 12646 GTGGCATCCACCACGAATCGCTCCACGTAGTTGTGGTGGCAGTTCACGGCATGCGCGCCA 12587 Query 139788 TCCGTCTTGAAGGG--CGG-CAGGCCCGAGGCGCG---CATGGCGTCCAGGACCCGGATC 139841 ||| || ||| | ||| | || | |||||| || ||||||||| || | Sbjct 12586 TCCACCTCGAATGCGACGGACGGGGGCAGGGCGCGGCGCAGGGCGTCCAGCACAAACGCC 12527 Query 139842 ATCATCATCTCGCGGTTGATCCGCGCGAAGTCCTGACCCCAGGCGACGGCTTCCACGTAG 139901 ||||||| | ||||| | ||| || ||| |||| | || || | | ||| Sbjct 12526 ATCATCAACCGTCGGTTCCACATCGCATAGGTCTGTGCCCACTCCACCGCGGCGATGTAC 12467 Query 139902 TCGTAGAATTC--CGGCTCGCCTTCCGACAGCCACGCGAGGTCCTTGTCGAGCGGCTTCT 139959 || ||| | ||| ||| || | || | ||||||||||||| || || | | Sbjct 12466 TCCGTGAAGTGGACGGT--GCCCTCTGTGAGGTAGGCGAGGTCCTTGTGCGGCAGCGTGT 12409 Query 139960 G-ACCGTCCCGACGCAGCATCATCTCCTTGGCCTTCTCGATGAAGATACGGCCGATGGTG 140018 | ||| | | | ||| || || |||| | ||| || | | ||||||| | Sbjct 12408 GCACCAGCGCCCC----CATGTCCTTCTGGGCCAGAGCAATGTAGGTGCTGCCGATGCGG 12353 Query 140019 TTGCCGACGCCGCGCGAGCCCGAGTGGAGCATCACCCAGACGCGCT---------GGTCC 140069 || || | |||||||| |||||||| ||||||||||| ||| ||| |||| Sbjct 12352 TTACCAATCCCGCGCGACCCCGAGTGCAGCATCACCCACACGTGCTGCTGAATGGGGTCG 12293 Query 140070 TCGTCGAGGCAGACCTCGATGAAGTGGTTGCCGCCGCCCAGCGTGCCCAGTTGGACGACG 140129 | || ||||| ||||||||||| ||||| || ||| |||||||| || ||| || | Sbjct 12292 TTATCCAGGCACACCTCGATGAAATGGTTCCCAGTGCCGAGCGTGCCGAGGTGGTTGATG 12233 Query 140130 CTGTTGG 140136 ||||| Sbjct 12232 TGGTTGG 12226 Score = 86.0 bits (94), Expect = 9e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 140349 ACGGCCATCATGCCGCAGCCGATGTCCACGCCCACGGCCGCCGGGATGATGGCGCCCTTG 140408 || |||| ||||||||| || ||||||||||| ||| || ||||| | ||||| | Sbjct 12004 ACAGCCACCATGCCGCACCCAATGTCCACGCCGACGCTGGCGGGGATCAGCGCGCCGCTC 11945 Query 140409 GTCGGGATCACCGAGCCCACGGTCGAGCCGATGCCCATGTGGACGTCCGGCATCAGGGCC 140468 ||||||||||||| || || || | |||||||| |||||| || ||||| | ||| Sbjct 11944 GTCGGGATCACCGTCCCGACCGTGCACCCGATGCCGCCGTGGACATCTGGCATGATGGCG 11885 Query 140469 AC 140470 || Sbjct 11884 AC 11883 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 715749140505600