Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20culicis_20[genbank_20GCA_5F000482145.1_202013-10-25] 3,002 sequences; 23,587,153 total letters Query= NC_019410.1 Length=221828 Score E Sequences producing significant alignments: (Bits) Value seq45 145 1e-29 >seq45 Length=57489 Score = 145 bits (160), Expect = 1e-29 Identities = 445/678 (66%), Gaps = 44/678 (6%) Strand=Plus/Minus Query 137304 TTTCGTCGATCACGCCGGCGTCCTTGCGGCACTCCACGCCCTCGGTGGCCTTGATCTGGT 137363 |||| |||| ||||||||||||||||||||||||||| |||| |||||| | |||| Sbjct 12906 TTTCATCGAGCACGCCGGCGTCCTTGCGGCACTCCACTCCCTGAGTGGCCGCCACGTGGT 12847 Query 137364 CCTCCAGAGTGAAG-GTCGCCTTGGCCTGGGTCCGCGACATCGTCCGGCCCGCGCCGTGC 137422 | |||| |||||| | ||| | | | | || || | || || || |||||||| Sbjct 12846 CGGCCAGCGTGAAGCGGCGCTTCGTCTCGCCTCTGCTGAAGCG-GCGCCCGGCGCCGTGG 12788 Query 137423 GAGCACGAGCAGAACGAGTCCGCATTGCCCTTGCCGCGCACGATGTAGGACTTGGCCCCC 137482 ||||| || ||| | | | |||||||| |||||||| |||||| || ||| Sbjct 12787 GAGCAGGAACAGTAGCTGCTCATGTTGCCCTTCCCGCGCACAATGTAGCTGCGCGCGCCC 12728 Query 137483 ATCGAGCCGGGGATGATCCCGAACTGGTC-CTTCTGCGCCGACACCGCGCCCTTGCGGGT 137541 || || ||||||| || | ||| || | | | ||| || || ||||||||||| || Sbjct 12727 ATGGACCCGGGGACGACCGCGAGCTCGCCGCGCCTG-GCGGAGGTGGCGCCCTTGCGAGT 12669 Query 137542 CACGAAGACCCACT-CGTCGAAGTGGAATTC--------CTTCTGGACGTAGTTGTGGTG 137592 | | || || | ||| |||| || | || |||||||||||||| Sbjct 12668 GAGCCACACGGCCTCCCCCGACGTGGCATCCACCACGAATCGCTCCACGTAGTTGTGGTG 12609 Query 137593 GCAGTTCACCGCTTCCTTG---TCCGTCTTGA-----ACGGCGGCAGGCCCGACGC-CCG 137643 ||||||||| || | | | ||| || || |||| | ||| | ||| || Sbjct 12608 GCAGTTCACGGCATGCGCGCCATCCACCTCGAATGCGACGGACGGGGGCAGGGCGCGGCG 12549 Query 137644 CATGGCCTCCAGGACCCGGACCATCATCATCTCGCGGTTGATCCGCGCGAAGTCCTGGCC 137703 || ||| ||||| || ||||||||| | ||||| | ||| || ||| | Sbjct 12548 CAGGGCGTCCAGCACAAACGCCATCATCAACCGTCGGTTCCACATCGCATAGGTCTGTGC 12489 Query 137704 CCAGGCGACGGCTTCCACGTAGTCGTGGAACT--CCGGCTCGCCTTCGCAGAGCCAAGCA 137761 ||| | || || | | ||| || ||| | ||| ||| || ||| | || Sbjct 12488 CCACTCCACCGCGGCGATGTACTCCGTGAAGTGGACGG--TGCCCTCTGTGAGGTAGGCG 12431 Query 137762 AGGTCCTTGTCCAGCGGCTTGCGCCCGTCACGGCGCAGCATCATCTCCTT---GGCCTTC 137818 |||||||||| | || || || || | | |||| | ||| ||||| |||| Sbjct 12430 AGGTCCTTGTGCGGCAGCGTGTGCAC----CAGCGC--CCCCATGTCCTTCTGGGCCAGA 12377 Query 137819 TCGATGAAGATGCGGCCGATGGTGTTGCCGACGCCGCGCGAGCCCGAGTGGAGCATCACC 137878 | ||| || ||| ||||||| ||| || | |||||||| |||||||| ||||||||| Sbjct 12376 GCAATGTAGGTGCTGCCGATGCGGTTACCAATCCCGCGCGACCCCGAGTGCAGCATCACC 12317 Query 137879 CAGACGCGCT---------GATCCTCGTCGAGGCAGACCTCGATGAAGTGGTTGCCGCCG 137929 || ||| ||| | || | || ||||| ||||||||||| ||||| || | Sbjct 12316 CACACGTGCTGCTGAATGGGGTCGTTATCCAGGCACACCTCGATGAAATGGTTCCCAGTG 12257 Query 137930 CCCAGGGTGCCCAGTTGG 137947 || || ||||| || ||| Sbjct 12256 CCGAGCGTGCCGAGGTGG 12239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 709694967696960