Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20culicis_20[genbank_20GCA_5F000482145.1_202013-10-25] 3,002 sequences; 23,587,153 total letters Query= NC_019411.1 Length=219216 Score E Sequences producing significant alignments: (Bits) Value seq45 140 5e-28 >seq45 Length=57489 Score = 140 bits (154), Expect = 5e-28 Identities = 438/668 (66%), Gaps = 44/668 (7%) Strand=Plus/Minus Query 136078 CACGCCGGCGTCCTTGCGGCACTCCACGCCCTCGGTGGCCTTGATCTGGTCCTCCAGGGT 136137 ||||||||||||||||||||||||||| |||| |||||| | ||||| |||| || Sbjct 12896 CACGCCGGCGTCCTTGCGGCACTCCACTCCCTGAGTGGCCGCCACGTGGTCGGCCAGCGT 12837 Query 136138 GAAG-GTCGCCTTGGCCTGGGTCCGCGACATCGTCCGGCCCGCGCCGTGCGAGCACGAGC 136196 |||| | ||| | | | | || || | || || || |||||||| ||||| || | Sbjct 12836 GAAGCGGCGCTTCGTCTCGCCTCTGCTGAAGCG-GCGCCCGGCGCCGTGGGAGCAGGAAC 12778 Query 136197 AGAACGAGTCCGCGTTGCCCTTGCCGCGCACGATGTAGGACTTGGCCCCCATCGAGCCGG 136256 || | | | ||||||||| |||||||| |||||| || ||||| || |||| Sbjct 12777 AGTAGCTGCTCATGTTGCCCTTCCCGCGCACAATGTAGCTGCGCGCGCCCATGGACCCGG 12718 Query 136257 GGATGATCCCGAACTGGTC-CTTCTGCGCCGACACCGCGCCCTTGCGGGTCACGAAGACC 136315 ||| || | ||| || | | | ||| || || ||||||||||| || | | || Sbjct 12717 GGACGACCGCGAGCTCGCCGCGCCTG-GCGGAGGTGGCGCCCTTGCGAGTGAGCCACACG 12659 Query 136316 CACT-CGTCGAAGTGGAATTC--------CTTCTGGACGTAGTTGTGGTGGCAGTTCACC 136366 || | ||| |||| || | || ||||||||||||||||||||||| Sbjct 12658 GCCTCCCCCGACGTGGCATCCACCACGAATCGCTCCACGTAGTTGTGGTGGCAGTTCACG 12599 Query 136367 GCTTCCTTG---TCCGTCTTGA-----ACGGCGGCAGGCCCGACGC-TCGCATGGCCTCC 136417 || | | | ||| || || |||| | ||| | ||| |||| ||| ||| Sbjct 12598 GCATGCGCGCCATCCACCTCGAATGCGACGGACGGGGGCAGGGCGCGGCGCAGGGCGTCC 12539 Query 136418 AGGACCCGGACCATCATCATCTCGCGGTTGATCCGCGCGAAGTCCTGGCCCCAGGCGACG 136477 || || ||||||||| | ||||| | ||| || ||| |||| | || Sbjct 12538 AGCACAAACGCCATCATCAACCGTCGGTTCCACATCGCATAGGTCTGTGCCCACTCCACC 12479 Query 136478 GCTTCCACGTAGTCGTGGAACT--CCGGCTCGCCTTCGCAGAGCCAAGCAAGGTCCTTGT 136535 || | | ||| || ||| | ||| ||| || ||| | || |||||||||| Sbjct 12478 GCGGCGATGTACTCCGTGAAGTGGACGG--TGCCCTCTGTGAGGTAGGCGAGGTCCTTGT 12421 Query 136536 CCAGCGGCTTACGCCCGTCACGGCGCAGCATCATCTCCTT---GGCCTTCTCGATGAAGA 136592 | || || | || | | |||| | ||| ||||| |||| | ||| || Sbjct 12420 GCGGCAGCGTGTGCAC----CAGCGC--CCCCATGTCCTTCTGGGCCAGAGCAATGTAGG 12367 Query 136593 TGCGGCCGATGGTGTTGCCGACGCCGCGCGAGCCCGAGTGGAGCATCACCCAGACGCGCT 136652 ||| ||||||| ||| || | |||||||| |||||||| ||||||||||| ||| ||| Sbjct 12366 TGCTGCCGATGCGGTTACCAATCCCGCGCGACCCCGAGTGCAGCATCACCCACACGTGCT 12307 Query 136653 ---------GGTCCTCGTCGAGGCAGACCTCGATGAAGTGGTTGCCGCCGCCCAGGGTGC 136703 |||| | || ||||| ||||||||||| ||||| || ||| || |||| Sbjct 12306 GCTGAATGGGGTCGTTATCCAGGCACACCTCGATGAAATGGTTCCCAGTGCCGAGCGTGC 12247 Query 136704 CCAGTTGG 136711 | || ||| Sbjct 12246 CGAGGTGG 12239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 701336881345920