Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20culicis_20[genbank_20GCA_5F000482145.1_202013-10-25] 3,002 sequences; 23,587,153 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq2 302 8e-77 seq1609 233 4e-56 seq866 132 9e-26 >seq2 Length=121565 Score = 302 bits (334), Expect = 8e-77 Identities = 1000/1533 (65%), Gaps = 68/1533 (4%) Strand=Plus/Plus Query 212736 GCGGCCATGTCTATGATATCTCTCTGGGAGAGCTCCCACACGGTCTTGAAGATTTCTTTG 212795 ||||||||||| |||| | ||| |||| |||||| ||||| | ||| || Sbjct 25027 GCGGCCATGTCGATGAGGGTGCGCTGCGAGATCTCCCAGACGGTGCGGTAGAGCTCGCGC 25086 Query 212796 AGGTCCTCTGGGAAGCCGGGGATGTTCTGCACAGACCCCCTGTGTATGGTCAGCTGCAGG 212855 |||||| | |||| | | | ||||||||| ||||| || || | | || | Sbjct 25087 AGGTCCGCGGGGATGTCCATCACGTTCTGCACCGACCCGTTGAAGGTGATGATCTCGTTG 25146 Query 212856 CGCATGTCCTCGTTCCAGAGGCCCCTGGTCTCCAGGCACTTGACCAGGTGAGGGTTGACT 212915 || || | ||| |||| ||||| | ||| | | || |||| ||| || Sbjct 25147 CGGATCTTGTCGCTCCACAGGCCGCGCTGAATGAGGTCCATCACGAGGTACTTGTTCACA 25206 Query 212916 ATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATG 212975 | |||| || || ||||| | | | ||| | ||| || ||| ||||||||| | Sbjct 25207 ACGGGGAACTCGCCGCTCAGCACGCGGCGCACGTAGATGTTGGAGGTGAAGGGCTCGAAG 25266 Query 212976 CTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGA 213035 | ||||||||| ||||||||||| | ||| ||| || ||||| || || | || || Sbjct 25267 CACTCGTTGTTGCCCAGAATCTGCGACGTGGAGGCGGTCGGCATCGGCGCGAGGAGCAGC 25326 Query 213036 CTGTTCCTCACTCCGTGCTCGCCGATGAGGCGCCGAAGCTCTGCCCAGTCCCATCTGCCA 213095 ||| | || || ||| ||| | | | | | ||||||||||| | ||| Sbjct 25327 GAGTTGCGCATGCCAACCTCCACGACGCGCTTCTTCAAGGCCGCCCAGTCCCAGCGGCC- 25385 Query 213096 GACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCCTTTGCTCACGGGG 213155 | || ||| | | | | ||||||| ||| ||||||| | || || | ||||| Sbjct 25386 ----GCTCTTCGGCGT-CTCCTTCCACAGGTCGAACTGCAGCAGCCCCTTCGACGCGGGG 25440 Query 213156 CTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGACGCCTGCAGG 213215 ||||||||| | | ||||||||| | | || ||||| || ||| | || || Sbjct 25441 CTGCCCTGGAACGTCTCGTAGGGGCCCTCCACCGCCGCCAGGTCCACGGAGGACTCCACC 25500 Query 213216 GCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTCTGGGGACGTG 213275 || ||||||||||||| || || || ||| |||||| || ||||| ||| |||| Sbjct 25501 GCGCCGTAGTAGATGGTCTCGAAGATGTCCTCGTTGAGGCGCTGCGCCTCCGGGCTCGTG 25560 Query 213276 AAGGGCATC---ATCATGCGTTGGAACACATCAGCCAGCCCCTGGACCCCGATGCCGATG 213332 |||| | | | || || ||| | || || || ||||| || |||| ||||||| Sbjct 25561 AAGGAGAGCCGGAGCAGGCA---GAAGGCGTCTGCGAGGCCCTGCACGCCGAGGCCGATG 25617 Query 213333 GGTCTGTGTCTCAGGTTAGACTTGGAGCACTC------CTCCAAGGGGTAAAAGTTGCAG 213386 || | ||| | || ||| || || ||| ||| | |||||| |||| | | Sbjct 25618 GGGCGGTGGCGCATGTTG--CT----GCGCTCGGCGGTCTCGACGGGGTAGTAGTTTCGG 25671 Query 213387 TCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGTACTCGTGA 213446 || |||| |||||||||| |||| | | || || || | || || ||| Sbjct 25672 TCTATGACACGGTTGAGGTTGTAGGTGATCTCCTTCGTCACCTCATAGAGCCGCTGGTGG 25731 Query 213447 TTGAACACGTAGCCCCCGTCCTGCACAAACTCAGGCAGGGCGATGCTGGCCAGGTTGCAA 213506 | ||| ||| | || | |||||||| | ||| ||||| |||||||||||| Sbjct 25732 TCAAACTCGTTCTTCTCGCGGTTCACAAACTTGGACAGCGCGATCGAGGCCAGGTTGCAC 25791 Query 213507 ACGGCCACCTC---CTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGCTGCAT 213563 || ||| ||| || ||| |||||||| |||||||| ||||||||||| ||| Sbjct 25792 ACCGCCGTCTCGTCCTTCGAG---GTGTACTCGATGATCTCCGTGCACAGGTTAGAGCAC 25848 Query 213564 CGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATG 213623 ||||||||| |||||||| ||||| ||||| |||||| | |||||||||||||||| Sbjct 25849 TTGATGGTGCCGAGGTTCTGCTGGTTCGACTTGGCGTTGCAGGCATCCTTGTAGAGCATG 25908 Query 213624 TAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGC--TCCAGAGGTACCTG-GCC 213680 | || || || || | ||| ||| |||| | |||| ||| || | |||| ||| Sbjct 25909 AACGGCACGCCCGTTTCGATCTGAGACTCCAGAA--TGGCAAACCACAGCT-CCTGCGCC 25965 Query 213681 TTGACCACCCGCCTGACAGCTCCGGGCGTAGCCTCGTACTGTTCGTAGAGCTCGTTGAAT 213740 | ||| || || | || | | || |||||| |||||||||| | ||| Sbjct 25966 TGGACGGTGCGGATGCCCATACC---CTTCGCTTCGTACCCCTCGTAGAGCTTCTCGAAC 26022 Query 213741 TCGTGGCC---CCAGACCCTGTCCAGTCCCG--GACAGGATGCGGGACACATGAGGCTCC 213795 || | ||| ||| | ||| || || | | | | || ||| | |||||| ||| Sbjct 26023 TCCTCGCCGTGGCAGTCGCTG---AGGCCGGGCGTCGTGTTG-GGGTC-CATGAGCGTCC 26077 Query 213796 AGTCCCCGTCA-TCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAAC 213854 | | || ||| ||| | || | || |||||| |||||||||| ||| |||||| ||| Sbjct 26078 ACTTGCCCTCACTCT-TCACGCGCTTCATGAAGAGGTCCGGGATCCAGAGCGCGTAGAAG 26136 Query 213855 AGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGC----AGATCTAGAAAGTC 213910 ||||| | | | | || ||| |||| | |||||| || | || || || Sbjct 26137 AGGTCGCGCGCGCGCTGGTCCTCCTTGCCAG---TGTTGCGCTTCATGAGC-AGGAACTC 26192 Query 213911 AAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGGCCTCTT---GCC 213967 |||||||| |||||||||||||| | ||| ||||| ||||||||| | ||| ||| Sbjct 26193 GAAGATGTCGGCGTGCCACGGCTCGAGGTACATGGCGAAGGCGCCCTTGCGCTTACCGCC 26252 Query 213968 GCCCTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTT 214027 |||||| || || | |||| |||| | | ||| | | || | || ||||| Sbjct 26253 GCCCTGATCAACGTAGCGGGCCGTGTTGTTCCACACGCGGATCATCGGCATGAGGCCGTT 26312 Query 214028 GGACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCAGGTTGCTCATGGAGAG 214087 ||| |||||||| ||||| || || ||||| || | | |||| || || Sbjct 26313 CGACGTGCCGTTGGTGCCCGCGATGTAGCTGCCGGCCGCGCGGATGTTGTGGATATGGAT 26372 Query 214088 CCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAGTCTCCATGATGCC 214147 || ||||| || || |||| ||||| |||||| | ||| || || |||||| Sbjct 26373 GCCAATGCCGCCAGCCGCCTTGCTGATCACGGCGCACTCCTTCAGCGTGTCGTAGATGCC 26432 Query 214148 GGCCATGCTGTCATCTGTGA---GGTTCAGCAAGAAGCAGCTCGAGAGCTGGGGCCTGGA 214204 | |||||||| || | | | ||| ||| | ||||| | ||| ||| ||| Sbjct 26433 CTCGATGCTGTCGTCCTTCATCGCGACCAGGAAGCACGAGCTC---ATCTGCGGCTTGGG 26489 Query 214205 CGAGCCAGAGTTGAAAAGCGTGGGGCTGGCATG 214237 | || | |||||| ||||||||| |||| || Sbjct 26490 GGTACCGGCGTTGAAGAGCGTGGGGGTGGCGTG 26522 >seq1609 Length=2085 Score = 233 bits (258), Expect = 4e-56 Identities = 507/754 (67%), Gaps = 15/754 (2%) Strand=Plus/Minus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 |||||| || | || | ||||| |||||||| ||||| || | ||||| |||| Sbjct 1586 CTGGTACTCGGCGACCTTCTTCTCGAAGAAGTTGGTCTTGCCGGTGAGGGAGATCATCTC 1527 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAG 47958 ||||||| ||||||||||| | ||| || | |||||||| | | ||||| Sbjct 1526 CATGAAGTCGAAGGGGTTGGTGGAGTTGTAGTGCTTCTCCAGGCCCAGCGACACGAGCAG 1467 Query 47959 GTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGA 48018 | | ||||||||| |||||||||| | ||||||| | ||||||||| |||||| Sbjct 1466 GCGGTCCGCGACGAACTCGATGTACTGGCTCATGAGGTCGGCGTTCATGCCGATGAGGCG 1407 Query 48019 CACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTG 48078 |||||||| || | || ||||||||||| || ||||| || | || | Sbjct 1406 CACGGGCAGCGCGTCGCAGATGAACTCCTTCTCGATGACGACGGCGTCGGTGATGATGTC 1347 Query 48079 CTTAACGCGGGACTCT-GAGG--GTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGC 48135 | ||||| ||| | || | |||| | ||| || || |||| |||||| Sbjct 1346 CAGCACGCG---CTCGCGCGGCAGCTTGTGTTTGATGTGGCTGTTGTACAGCAGGCAGGC 1290 Query 48136 AAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGG 48195 ||||| |||||| ||| ||||| || ||||||| ||||| |||| ||| || || Sbjct 1289 GAAGTCGGTGTGCAGGCCCTCGTCGCGCGAGATGAGCTCGTTGCTGAAGGTGAGGCCGGG 1230 Query 48196 CATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCC 48255 ||| || || | || ||||||||||| || | ||| ||||| |||||||||||||| Sbjct 1229 CATCACGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAGCCGGAGAAGAAGATGCC 1170 Query 48256 CTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCA 48315 ||| || |||||||| || |||||| ||| ||| ||| || | |||||| Sbjct 1169 CTCGACGGCCGCGAAGCCGATGAGCCGCTCCTGGAAGCTGGCGGCGCTGCC---GATCCA 1113 Query 48316 GGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGC---CCGGAA 48372 | | ||||||| |||||||||| |||||| || || |||| ||||| | | | Sbjct 1112 GCGCACGGCCCAGTTGGCCTTCTTCTGGATGCAGGGGATGGTCTGGATGGCGTGCAGCAG 1053 Query 48373 GAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCTC 48432 | || ||| ||| | ||||| | ||||| ||||||| | |||| |||| Sbjct 1052 GCGCAGCTT---CTCCGCGCTGTCCGTGATGTAGGTGTCGAGCAGCACCGAGTACGTCTC 996 Query 48433 AGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTG 48492 ||||| | ||||| || || |||||| ||||||||||| | ||||| ||||| Sbjct 995 GGAGTGGATGTTCTCCATCATGAGCTGGAAGCCGTAGAAGGCGCGCGCCTCGGGCACCTT 936 Query 48493 CACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAA 48552 || || | ||| | | || || ||||| ||| || || || | || || Sbjct 935 GACGTCGGACATGAAGCGCACCGCGAGGTTCTCGACGACGATGCCGTCGCTGCCGGCGAA 876 Query 48553 GAAGGCAAGGACATGTTTAAGGAAATGGCGCTCG 48586 |||||| || || || || | ||| || ||||| Sbjct 875 GAAGGCCAGCACGTGCTTGATGAAGTGCTGCTCG 842 >seq866 Length=6634 Score = 132 bits (146), Expect = 9e-26 Identities = 268/391 (69%), Gaps = 14/391 (4%) Strand=Plus/Minus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 |||||| || | || | ||||| |||||||| ||||| || | ||||| |||| Sbjct 385 CTGGTACTCGGCGACCTTCTTCTCGAAGAAGTTGGTCTTGCCGGTGAGGGAGATCATCTC 326 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAG 47958 ||||||| ||||||||||| | ||| || | |||||||| | | ||||| Sbjct 325 CATGAAGTCGAAGGGGTTGGTGGAGTTGTAGTGCTTCTCCAGGCCCAGCGACACGAGCAG 266 Query 47959 GTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGA 48018 | | ||||||||| |||||||||| | ||||||| | ||||||||| |||||| Sbjct 265 GCGGTCCGCGACGAACTCGATGTACTGGCTCATGAGGTCGGCGTTCATGCCGATGAGGCG 206 Query 48019 CACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTG 48078 |||||||| || | || ||||||||||| || ||||| || | || | Sbjct 205 CACGGGCAGCGCGTCGCAGATGAACTCCTTCTCGATGACGACGGCGTCGGTGATGATGTC 146 Query 48079 CTTAACGCGGGACTC-TGAGG--GTTTG---TTG-CGCAGGTGCTTGGCATAGAGCATGC 48131 | ||||| ||| | || | ||| ||| | || || ||| || |||| || Sbjct 145 CAGCACGCG---CTCGCGCGGCAGCTTGTGCTTGATGTAGCTG-TTG---TACAGCAGGC 93 Query 48132 AGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGAC 48191 |||| ||||| |||||| ||| ||||| || ||||||| ||||| |||| ||| | Sbjct 92 AGGCGAAGTCGGTGTGCAGGCCCTCGTCGCGCGAGATGAGCTCGTTGCTGAAGGTGAGGC 33 Query 48192 CAGGCATGACCCCCCTCTGTTTGAGCCAGAA 48222 | ||||| || || | || ||||||||||| Sbjct 32 CGGGCATCACGCCGCGCTTCTTGAGCCAGAA 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931497844231680