Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20culicis_20[genbank_20GCA_5F000482145.1_202013-10-25] 3,002 sequences; 23,587,153 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq2 215 1e-50 seq1609 158 2e-33 seq866 98.7 2e-15 >seq2 Length=121565 Score = 215 bits (238), Expect = 1e-50 Identities = 691/1063 (65%), Gaps = 27/1063 (3%) Strand=Plus/Plus Query 221427 CGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGAGAAGTGAAGG 221486 ||| |||||||||||| ||||| || |||||| | || ||||| || ||||||| Sbjct 25505 CGTAGTAGATGGTCTCGAAGATGTCCTCGTTGAGGCGCTGCGCCTCCGGGCTCGTGAAGG 25564 Query 221487 GCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGATGGGCCTGT 221546 | || |||| ||| |||| || || ||||| || |||| |||||||| | || Sbjct 25565 AGAGCCGGAGCAGGCAGAAGGCGTCTGCGAGGCCCTGCACGCCGAGGCCGATGGGGCGGT 25624 Query 221547 GTCTCCTGTTGGAAGCGGCCGCT--TCTGGCACGGGATAAAAGTTGACGTCGATCAGATT 221604 | | | ||||| ||| || ||| | ||||| || |||| ||| || | | Sbjct 25625 GGCGCATGTTGCT-GCGCTCGGCGGTCTCG-ACGGGGTAGTAGTTTCGGTCTATGACACG 25682 Query 221605 GTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATTGAACACCAA 221664 ||||||||| ||||| | || |||||| ||| |||||| | | || Sbjct 25683 GTTGAGGTTGTAGGTGATCTCCTTCGTCACCTCATAGAGCCGCTGGTGGT------CAAA 25736 Query 221665 CTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGCCAGGTTACA 221724 |||| || | | ||||| ||||| | || || | ||||||||| || Sbjct 25737 CTCGT-----TCTTCTCGCGGTTC-ACAAACTTGGACAGCGCGATCGAGGCCAGGTTGCA 25790 Query 221725 CACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCACTT 221784 ||| ||| ||||||||| ||| |||| |||||||| || || ||||| |||||| Sbjct 25791 CACCGCCGTCTCGTCCTTCGAGGTGTACTCGATGATCTCCGTGCACAGGTTAGAGCACTT 25850 Query 221785 GATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAA 221844 |||||| || |||| | || || |||||| ||| || |||||||||||||| || Sbjct 25851 GATGGTGCCGAGGTTCTGCTGGTTCGACTTGGCGTTGCAGGCATCCTTGTAGAGCATGAA 25910 Query 221845 GGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCTG-GCGCTCA 221903 || |||| || || | ||||| | ||||||| ||| || || ||| || | Sbjct 25911 CGGCACGCCCGTTTCGATCTGAGACTCCAGAATGGCAAACCACAGCTC-CTGCGCCTGGA 25969 Query 221904 CCGTCCTCTTGACTGCACCCTCGGTCTTTTCATACCCGGTATAGAGCATGTCAAACTTTT 221963 | || | || | ||||| || ||| ||||| |||||| | || |||| | Sbjct 25970 CGGTGCGGATGCCCATACCCT---TCGCTTCGTACCCCTCGTAGAGCTTCTCGAACTCCT 26026 Query 221964 CACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGACTCCAGTGCTTGT 222023 | |||| ||| ||||| || | || ||| ||| || |||| |||| Sbjct 26027 CGCCGTGGCAGTCGCTGAGGCCGGGCGTCGTGTTGGGGTCCATGAGCGTCCA---CTTGC 26083 Query 222024 TGTC---TTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTC 222080 || || || | || ||||||||||||||||||||| ||||| | ||||| || | Sbjct 26084 CCTCACTCTTCACGCGCTTCATGAAGAGGTCCGGGATCCAGAGCGCGTAGAAGAGGTCGC 26143 Query 222081 TGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAG 222140 | ||||| |||||| ||| |||| | ||| || ||||| || ||||| | Sbjct 26144 GCGCGCGCTGGTCCTCCTTGCCAGTGTTGCGCTTCATGAGCAGGAACTCGAAGATGTCGG 26203 Query 222141 CGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGATCCA 222200 ||||||||||||| || || | ||| | ||||| ||||| ||| |||||||| | Sbjct 26204 CGTGCCACGGCTCGAGGTACATGGCGAAGGCGCCCTTGCGCTTACCGCCGCCCTGATCAA 26263 Query 222201 CCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGGATCGACCGT 222260 | | || ||| | | ||| | |||| | || ||||| || |||| Sbjct 26264 CGTAGCGGGCCGTGTTGTTCCACACGCGGATCATCGGCATGAGGCCGTTCGACGTGCCGT 26323 Query 222261 TGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCAGACATGCCGATACCAC 222320 |||||||| ||||| ||| | || | | ||| | | ||||| || || | Sbjct 26324 TGGTGCCCGCGATGTAGCTGCCGGCCGCGCGGATGTTGTGGATATGGATGCCAATGCCGC 26383 Query 222321 CGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCCCTCCATAGAGT 222380 | || || ||||| |||||| ||| || ||||| ||||||||| || || Sbjct 26384 CAGCCGCCTTGCTGATCACGGCGCACTCCTTCAGCGTGTCGTAGATGCCCTCGATGCTGT 26443 Query 222381 CCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTGGAACAGGCGTTAA 222440 | ||||| | | ||| || || || |||||| | |||| || || |||||| | Sbjct 26444 CGTCCTTCATCGCGACCAGGAAGCACGAGCTCATCTGCGGCTTGGGGGTACCGGCGTTGA 26503 Query 222441 ACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAG 222483 | |||||||| ||||||| || ||| ||||| ||||| || Sbjct 26504 AGAGCGTGGGGGTGGCGTGCGTGAAGAAGCCCTGCGACATGAG 26546 Score = 89.7 bits (98), Expect = 1e-12 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 221056 CTCGGTACGCATCTCGTCCGTCCATAGACCCCTCTCTTCCAGCACCTTGACCATGTGCTT 221115 |||| | || |||| ||| |||| || || | || || || | || | || ||| Sbjct 25140 CTCGTTGCGGATCTTGTCGCTCCACAGGCCGCGCTGAATGAGGTCCATCACGAGGTACTT 25199 Query 221116 GTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGG 221175 |||||| || |||| || || ||||| | | | ||| | ||| || ||||| || Sbjct 25200 GTTCACAACGGGGAACTCGCCGCTCAGCACGCGGCGCACGTAGATGTTGGAGGTGAAGGG 25259 Query 221176 TTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCAC 221235 |||| || ||||||||||||||| ||||| | |||| |||||| ||||| || || | Sbjct 25260 CTCGAAGCACTCGTTGTTGCCCAGAATCTGCGACGTGGAGGCGGTCGGCATCGGCGCGAG 25319 Query 221236 CAGCAGACTGTTGCGCA 221252 ||||| |||||||| Sbjct 25320 GAGCAGCGAGTTGCGCA 25336 >seq1609 Length=2085 Score = 158 bits (174), Expect = 2e-33 Identities = 418/636 (66%), Gaps = 11/636 (2%) Strand=Plus/Plus Query 25690 TTCTACGGTTTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTG 25749 |||||||| |||||| | || || || | ||||| ||| ||| | ||| || Sbjct 957 TTCTACGGCTTCCAGCTCATGATGGAGAACATCCACTCCGAGACGTACTCGGTGCTGCTC 1016 Query 25750 ATGACGTACATTACAGACGTCGCCGAGAGAGAT-CGGCTGTTTGGTGCCATCGAGCACAT 25808 || ||||| || ||| ||| |||| || | || ||| | |||||| || ||| Sbjct 1017 GACACCTACATCACGGACAGCGCGGAGA-AGCTGCGCCTGCTGCACGCCATCCAGACCAT 1075 Query 25809 ACCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTAC 25868 ||| ||||| ||| |||||| |||||| || |||||| |||| ||| | Sbjct 1076 CCCCTGCATCCAGAAGAAGGCCAACTGGGCCGTGCGCTGGATCGGCAGCGC---CGCCAG 1132 Query 25869 GTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT 25928 || |||||||| | | ||| || || || ||||||||||| ||| ||| || || Sbjct 1133 CTTCCAGGAGCGGCTCATCGGCTTCGCGGCCGTCGAGGGCATCTTCTTCTCCGGCTCCTT 1192 Query 25929 -TGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACG 25987 ||| ||||||||||||||||| || || |||||||| || ||| ||||| Sbjct 1193 CTGC-TCCATCTTCTGGCTCAAGAAGCGCGGCGTGATGCCCGGCCTCACCTTCAGCAACG 1251 Query 25988 AGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCC 26047 |||||||| | |||||||| || |||| || || ||||||||||| |||| ||| Sbjct 1252 AGCTCATCTCGCGCGACGAGGGCCTGCACACCGACTTCGCCTGCCTGCTGTACAACAGCC 1311 Query 26048 ACTTGCTCCACAAACCTTCTCAAGAGACCGT-CTACAGTATCATCAAAGAGGCTGTGGAG 26106 || | ||||| | | | ||| ||| || | ||||||| || || || | Sbjct 1312 ACATCAAACACAAGCTGCCGCGCGAGCGCGTGCTGGA-CATCATCACCGACGCCGTCGTC 1370 Query 26107 ATCGAGAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGA 26166 |||||||||||||| | ||||||||| | Sbjct 1371 ATCGAGAAGGAGTTCATCTGCGACGCGCTGCCCGTGCGCCTCATCGGCATGAACGCCGAC 1430 Query 26167 CTCATGAGCCAATACATTGAGTATGTGGCCGACCATCTGCT-GTGCCAGCTGGGACTCGC 26225 ||||||||||| ||||| |||| || || |||| ||||| ||| | |||||| || | Sbjct 1431 CTCATGAGCCAGTACATCGAGTTCGTCGCGGACCGCCTGCTCGTGTC-GCTGGGCCTGGA 1489 Query 26226 CAGACTCTACAGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAA 26285 | | ||||| | | ||||| |||||||| ||||| | || || | || || Sbjct 1490 GAAGCACTACAACTCCACCAACCCCTTCGACTTCATGGAGATGATCTCCCTCACCGGCAA 1549 Query 26286 GACCAACTTCTTTGAAAAGAGGGTCGGCGACTATCA 26321 |||||||||||| || |||| ||||| ||| || || Sbjct 1550 GACCAACTTCTTCGAGAAGAAGGTCGCCGAGTACCA 1585 >seq866 Length=6634 Score = 98.7 bits (108), Expect = 2e-15 Identities = 251/386 (65%), Gaps = 4/386 (1%) Strand=Plus/Plus Query 25938 CTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAG 25997 ||||||||||||| || || |||||||| || ||| ||||||||||||| Sbjct 1 CTTCTGGCTCAAGAAGCGCGGCGTGATGCCCGGCCTCACCTTCAGCAACGAGCTCATCTC 60 Query 25998 CAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCA 26057 | |||||||| || |||| || || ||||||||||| |||| || || | || Sbjct 61 GCGCGACGAGGGCCTGCACACCGACTTCGCCTGCCTGCTGTACAACAGCTACATCAAGCA 120 Query 26058 CAAACCTTCTCAAGAGACCGT-CTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGG 26116 ||| | | | ||| ||| || | ||||||| || || || | |||||||||| Sbjct 121 CAAGCTGCCGCGCGAGCGCGTGCTGGAC-ATCATCACCGACGCCGTCGTCATCGAGAAGG 179 Query 26117 AGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCC 26176 |||| | ||||||||| | |||||||||| Sbjct 180 AGTTCATCTGCGACGCGCTGCCCGTGCGCCTCATCGGCATGAACGCCGACCTCATGAGCC 239 Query 26177 AATACATTGAGTATGTGGCCGACCATCTGCT-GTGCCAGCTGGGACTCGCCAGACTCTAC 26235 | ||||| |||| || || |||| ||||| ||| | |||||| || | | | |||| Sbjct 240 AGTACATCGAGTTCGTCGCGGACCGCCTGCTCGTGTC-GCTGGGCCTGGAGAAGCACTAC 298 Query 26236 AGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTC 26295 | | | ||||| |||||||| ||||| | || || | || |||||||||||| Sbjct 299 AACTCCACCAACCCCTTCGACTTCATGGAGATGATCTCCCTCACCGGCAAGACCAACTTC 358 Query 26296 TTTGAAAAGAGGGTCGGCGACTATCA 26321 || || |||| ||||| ||| || || Sbjct 359 TTCGAGAAGAAGGTCGCCGAGTACCA 384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928809945098880