Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20culicis_20[genbank_20GCA_5F000482145.1_202013-10-25] 3,002 sequences; 23,587,153 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq2 167 3e-36 >seq2 Length=121565 Score = 167 bits (184), Expect = 3e-36 Identities = 676/1051 (64%), Gaps = 37/1051 (4%) Strand=Plus/Minus Query 75212 CCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTC 75271 || ||| ||||| || |||| || || || ||||||||||| | ||| | || ||| Sbjct 26621 CCGCAGCACATGATCCTGCGCGTGGCGATTGGCATCCACGGCAAGGACCTGGAGCGCGTC 26562 Query 75272 TTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTC 75331 | |||||| ||||| || || | |||| ||||| || || || |||||| Sbjct 26561 CGCAACACATACATGCTCATGTCGCAGGGCTTCTTCACGCACGCCACCCCCACGCTCTTC 26502 Query 75332 AATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGAC 75391 || || ||||| || | ||||||||| | |||||||| |||| | ||||| ||| Sbjct 26501 AACGCCGGTACCCCCAAGCCGCAGATGAGCTCGTGCTTCCTGGTCGCGATGAAGGACGAC 26442 Query 75392 TCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGG 75451 ||| | || ||||| | || || | |||||| || ||| ||| |||||| Sbjct 26441 AGCATCGAGGGCATCTACGACACGCTGAAGGAGTGCGCCGTGATCAGCAAGGCGGCTGGC 26382 Query 75452 GGTATTGGGATGCACATCCATGATGTGAGAGC------CAA-TAAATCTCGTATTCGGGG 75504 || ||||| || || ||||| | | | || || || ||| || || Sbjct 26381 GGCATTGGCATCCATATCCACAACATCCGCGCGGCCGGCAGCTACATCGCG-------GG 26329 Query 75505 GACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCG 75564 || || || || | || | || || ||| | ||||| | ||| ||| || || Sbjct 26328 CACCAACGGCACGTCGAACGGCCTCATGCCGATGATCCGCGTGTGGAACAACACGGCCCG 26269 Query 75565 CTATGTAAATCAAGCGGGGCGT---CGCAAGGGGTCCATCGCGGTCTACTTGGAACCATG 75621 ||| || |||| | || || |||||||| || |||| | ||| | || || || Sbjct 26268 CTACGTTGATCAGGGCGGCGGTAAGCGCAAGGGCGCCTTCGCCATGTACCTCGAGCCGTG 26209 Query 75622 GCATGCCGATATCATGGAGTTCCT-----TGAGTTACGACTCAACCAAGGTGACGAAGAG 75676 ||| ||||| ||| | |||||||| ||| | || | ||||| | || || Sbjct 26208 GCACGCCGACATCTTCGAGTTCCTGCTCATGAAGCGCAACACTGGCAAGGAG--GACCAG 26151 Query 75677 -GCTCGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGT 75735 || || | || ||||| | | || ||||| || ||||| ||||||||||| || Sbjct 26150 CGCGCGC----GCGACCTCTTCTACGCGCTCTGGATCCCGGACCTCTTCATGAAGCGCGT 26095 Query 75736 TGAGGAGGGTGGTCAA-TGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACG 75794 || ||| | || ||| ||| | || | || ||| | | || || ||| |||| Sbjct 26094 -GAAGAGTGAGGGCAAGTGGACGCTCATGGACCCCAACACGACGCCCGGCCTCAGCGACT 26036 Query 75795 CGGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAATG 75854 || |||||||| || |||||| ||| |||| | |||||| | || | Sbjct 26035 GCCACGGCGAGGAGTTCGAGAAGCTCTACGAGGGGTACGAAGCGAAGGGTATGGGCA-TC 25977 Query 75855 CG-ACTGTACCAGCCGCCGATGTT-TGGAAGGCTATTCTCAAATCACAGACGGAGACTGG 75912 || || || |||| ||| | | | ||| || ||||| | || |||| || || || Sbjct 25976 CGCACCGT-CCAGGCGCAGGAGCTGTGGTTTGCCATTCTGGAGTCTCAGATCGAAACGGG 25918 Query 75913 AACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGG 75972 || | ||||| ||||||||||| || ||| ||| ||||| |||| | || Sbjct 25917 CGTGCCGTTCATGCTCTACAAGGATGCCTGCAACGCCAAGTCGAACCAGCAGAACCTCGG 25858 Query 75973 AACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGAC 76032 || |||||| |||| || || |||||||| || | |||||||| ||||| ||||| Sbjct 25857 CACCATCAAGTGCTCTAACCTGTGCACGGAGATCATCGAGTACACCTCGAAGGACGAGAC 25798 Query 76033 GGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTCGCAC 76092 ||| || ||||| |||| || ||||| || | |||| ||| || |||| | Sbjct 25797 GGCGGTGTGCAACCTGGCCTCGATCGCGCTGTCCAAGTTTGTGAACCGCGAGAAGAACGA 25738 Query 76093 TTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGT 76152 ||||| | | || |||| | || ||| | ||| | || || ||||| || Sbjct 25737 GTTTGACCACCAGCGGCTCTATGAGGTGACGAAGGAGATCACCTACAACCTCAACCGTGT 25678 Query 76153 CATTGACAGAAATTTTTATCCCGTTGAGACTGCGCGAAAG-TCTAATATGCGACACAGAC 76211 ||| ||| |||| | || ||||| ||||| || ||| | || ||||| ||| | | Sbjct 25677 CATAGACCGAAACTACTACCCCGTCGAGACCGC-CGAGCGCAGCAACATGCGCCACCGCC 25619 Query 76212 CTATTGGTTTGGGTGTTCAAGGTCTCGCGGA 76242 | || || | || || || || ||||| || Sbjct 25618 CCATCGGCCTCGGCGTGCAGGGCCTCGCAGA 25588 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596547213725760