Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20culicis_20[genbank_20GCA_5F000482145.1_202013-10-25] 3,002 sequences; 23,587,153 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq2 125 6e-24 seq455 116 3e-21 seq2803 109 5e-19 seq782 107 2e-18 seq36 87.8 2e-12 >seq2 Length=121565 Score = 125 bits (138), Expect = 6e-24 Identities = 271/405 (67%), Gaps = 3/405 (1%) Strand=Plus/Plus Query 139374 CATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAACAGATCCGGAATCCACAA 139433 |||||||| ||| ||| | ||| |||||| ||||||| || ||||| ||||| | Sbjct 26067 CATGAGCGTCCACTTGCCCTCACTCTTCACGCGCTTCATGAAGAGGTCCGGGATCCAGAG 26126 Query 139434 AGCGAACAGCAAATCGCGCGCCTTCTTATCTTCCGAACCCATGTTACGTTTCATGTTAAG 139493 ||| | | | |||||||| || || ||| || |||| || |||||| || Sbjct 26127 CGCGTAGAAGAGGTCGCGCGCGCGCTGGTCCTCCTTGCCAGTGTTGCGCTTCATGAGCAG 26186 Query 139494 GAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCATTGCGCCTTTCCGTTT 139553 ||| || || | ||| |||||||| || || || || ||||| | ||||| || || || Sbjct 26187 GAACTCGAAGATGTCGGCGTGCCACGGCTCGAGGTACATGGCGAAGGCGCCCTTGCGCTT 26246 Query 139554 ---GCCACCTTGATCGACGTGTCGTACAGCATTATTGAATACGCGCAACATCGGCTCCAG 139610 ||| || ||||| |||| || | | || || | ||||| | ||||||| || Sbjct 26247 ACCGCCGCCCTGATCAACGTAGCGGGCCGTGTTGTTCCACACGCGGATCATCGGCATGAG 26306 Query 139611 ACCGCTCGCTGTTCCGTTGGTGCTACGGATGGGACTGTTGCGAGCTCGGACGTCATGTAC 139670 ||| ||| || |||||||||| |||| ||| | || |||| || || | Sbjct 26307 GCCGTTCGACGTGCCGTTGGTGCCCGCGATGTAGCTGCCGGCCGCGCGGATGTTGTGGAT 26366 Query 139671 ATTGATGCCGATTCCGCCGCCAAATTTGGATATTAAAACGCAATCGCGTAATGTCTCGTA 139730 || |||||| || ||||| | ||| || | |||| || | || ||||| Sbjct 26367 ATGGATGCCAATGCCGCCAGCCGCCTTGCTGATCACGGCGCACTCCTTCAGCGTGTCGTA 26426 Query 139731 TATACCTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGCATGA 139775 || || ||||||||||||| ||||| |||||| ||||| || Sbjct 26427 GATGCCCTCGATGCTGTCGTCCTTCATCGCGACCAGGAAGCACGA 26471 >seq455 Length=15778 Score = 116 bits (128), Expect = 3e-21 Identities = 165/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 24700 TACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGC 24759 ||| |||||||||||| | || ||||| ||||| || || || | || || || || || Sbjct 241 TACCATGCAGATCTTTGTGAAGACGCTGACCGGCAAGACGATCGCCCTGGAGGTGGAGGC 182 Query 24760 CACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGA 24819 | |||||| | || | || || |||||||| ||||| || || || ||||| || Sbjct 181 GAGCGACACGATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCTCCGGA 122 Query 24820 TCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTA 24879 || || || |||||||||| || || ||||||||||| | | | | || || Sbjct 121 CCAGCAGCGCCTGATCTTTGCTGGTAAGCAGCTGGAGGAGGGCCGTACGCTCGCGGACTA 62 Query 24880 TAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||||| || ||||| ||||| || ||| ||||| | || ||||||| ||| Sbjct 61 CAACATCCAGAAGGAGTCGACGCTGCACCTGGTGCTCCGTCTGCGCGGCGGC 10 >seq2803 Length=585 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || ||||| ||||| || || || | || || || || || | | Sbjct 240 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCCCTGGAGGTGGAGGCGAGC 181 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || ||||| || || Sbjct 180 GACACGATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCAG 121 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || |||||||||| || || ||||||||||| | | | | || || ||| Sbjct 120 CAGCGCCTGATCTTTGCTGGTAAGCAGCTGGAGGAGGGCCGTACGCTCGCGGACTACAAC 61 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || ||||| ||||| || ||| ||||| | || ||||||| ||| Sbjct 60 ATCCAGAAGGAGTCGACGCTGCACCTGGTGCTCCGTCTGCGCGGCGGC 13 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || ||||| ||||| || || || | || || || || || | | Sbjct 468 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCCCTGGAGGTGGAGGCGAGC 409 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || ||||| || || Sbjct 408 GACACGATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCAG 349 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || |||||||||| || || ||||||||||| | | | | || || ||| Sbjct 348 CAGCGCCTGATCTTTGCTGGTAAGCAGCTGGAGGAGGGCCGTACGCTCGCGGACTACAAC 289 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || ||||| ||||| || ||| ||||| | || ||||||| ||| Sbjct 288 ATCCAGAAGGAGTCGACGCTGCACCTGGTGCTCCGTCTGCGCGGCGGC 241 >seq782 Length=7656 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || ||||| ||||| || || || | || || || || || | | Sbjct 7637 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCCCTGGAGGTGGAGGCGAGC 7578 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || ||||| || || Sbjct 7577 GACACGATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCAG 7518 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || |||||||||| || || ||||||||||| | | | | || || ||| Sbjct 7517 CAGCGCCTGATCTTTGCTGGTAAGCAGCTGGAGGAGGGCCGTACGCTCGCGGACTACAAC 7458 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| ||||| || ||| ||||| | || ||||||| || Sbjct 7457 ATCCAGAAGGAGTCGACGCTGCACCTGGTGCTCCGTCTGCGCGGTGG 7411 >seq36 Length=60674 Score = 87.8 bits (96), Expect = 2e-12 Identities = 165/243 (68%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || ||||| || || || | ||||| || || || | | Sbjct 7038 ATGCAGATCTTCGTGAAGACTCTGACCGGCAAGACGATCGCCCTCGAGGTCGAGGCGAGC 7097 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || || || || || Sbjct 7098 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAG 7157 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || | ||||| || || || ||||| ||||| | | | | || || ||| Sbjct 7158 CAGCGCCTCATCTTCGCTGGCAAGCAGCTCGAGGAGGGCCGCACGCTCGCGGACTACAAC 7217 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGGAACTGAGCCA 24943 ||||| ||||| || || || ||| | ||| |||| | ||||| || | | ||||| Sbjct 7218 ATTCAGAAGGAGTCCACGCTGCACCTCGTGCTGCGCCTCCGCGGCGGTGTGATGGAGCCC 7277 Query 24944 ACG 24946 ||| Sbjct 7278 ACG 7280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449880717592560