Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20culicis_20[genbank_20GCA_5F000482145.1_202013-10-25] 3,002 sequences; 23,587,153 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq2 241 1e-58 >seq2 Length=121565 Score = 241 bits (266), Expect = 1e-58 Identities = 966/1480 (65%), Gaps = 62/1480 (4%) Strand=Plus/Plus Query 146868 AATGAGGTC-ATCAATTAAATACTGATTGACCACTTGAAACTCGCCCGCCAGCACACGTC 146926 ||||||||| |||| | |||| || || || | |||||||| |||||| || | Sbjct 25176 AATGAGGTCCATCACG-AGGTACTTGTTCACAACGGGGAACTCGCCGCTCAGCACGCGGC 25234 Query 146927 TGAGATACACATTGCTAGTGAAAGGCTCAAAAGACTCATTATTGCCTAATATTTGGGCCG 146986 | || | ||| ||||| ||||| || |||| || ||||| | || || | || Sbjct 25235 GCACGTAGATGTTGGAGGTGAAGGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGCGACG 25294 Query 146987 TGGTTGCGGTAGGCATGTACGCCACCAACAATGAATTTCGCAGACCGTACGCACGGATGT 147046 ||| ||||| ||||| ||| | | || || || |||| || | | || | Sbjct 25295 TGGAGGCGGTCGGCATCGGCGCGAGGAGCAGCGAGTTGCGCATGCCAACCTCCACGACGC 25354 Query 147047 TGTCCTTCAAAGTTTGCCAGTCCCACAT--CGA-CGAGGGCGTCACGTTCCACATGTCGT 147103 | |||||| | ||||||||| || | |||||| | ||||||| |||| Sbjct 25355 GCTTCTTCAAGGCCGCCCAGTCCCAGCGGCCGCTCTTCGGCGTCTCCTTCCACAGGTCGA 25414 Query 147104 ACTGGAGCACTCC--TCGACTGGCGGGACTGCCAGCGAACGTAGTGTAGCTTCCGTCGCG 147161 |||| |||| || ||||| ||||| ||||| |||||| |||| || || Sbjct 25415 ACTGCAGCAGCCCCTTCGAC--GCGGGGCTGCCCTGGAACGTCTCGTAGGGGCCCTCCAC 25472 Query 147162 CTGCGCCAATTCACAGCTTGCCTCGAGCGCTCCATAGTATATGGTTTCGGCGATTTGTTT 147221 | ||||| || | | ||| | ||| || ||||| ||||| ||| ||| | | Sbjct 25473 CGCCGCCAGGTCCACGGAGGACTCCACCGCGCCGTAGTAGATGGTCTCGAAGATGTCCTC 25532 Query 147222 GTTTAGGACGGTCGCTTCTTCGCTCTCGTAAGGCATACGCAGAAGCA--CA-AAGGCATC 147278 ||| ||| || | || || || ||||| | | | | || | |||| || ||||| || Sbjct 25533 GTTGAGG-CGCT-GCGCCTCCGGGCTCGTGAAGGAGA-GCCGGAGCAGGCAGAAGGCGTC 25589 Query 147279 GGCCAAACCCTGGATACCGACGCCGATAGGTCGATGCTTTTCGTTGCTGCGCTTCGCGCT 147338 || | ||||| | |||| |||||| || || || ||||||||||| ||| | Sbjct 25590 TGCGAGGCCCTGCACGCCGAGGCCGATGGGGCGGTGGCGCATGTTGCTGCGCTCGGCGGT 25649 Query 147339 CGCTATGGGATAGTGGTTGCGATCAATAATCTTGTTGAGGTTACGCACTACAACT--TTA 147396 | | | ||| |||| ||| || || || | ||||||||| | | | || || Sbjct 25650 CTCGACGGGGTAGTAGTTTCGGTCTATGACACGGTTGAGGTT--GTAGGTGATCTCCTTC 25707 Query 147397 GTTATTGTTTTGAGTTTCTCGAAATCATAAGTCCCGTCTTCGACACGTACGCA---TTGG 147453 || | | ||| || | ||| || || ||||| || | || |||| Sbjct 25708 GTCACCTCATAGAGCCGCTGGTGGTCA-AACTCGT-TCTTCTCGCGGTTCACAAACTTGG 25765 Query 147454 TTCACGGCGATAGACGCCAGATTGCAGACGGCCGTCTCTTCGGCGTCGC--TGTACTGCA 147511 || ||||| || ||||| ||||| || |||||||| || | ||| |||||| | Sbjct 25766 A-CAGCGCGATCGAGGCCAGGTTGCACACCGCCGTCTCGTC--CTTCGAGGTGTACTCGA 25822 Query 147512 CGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATT-GCTTTTC 147570 ||| || | ||||||||| ||| || ||| || | || ||||| || | || Sbjct 25823 TGATCTCCGTGCACAGGTTAGAGCACTTGATGGTGCCGAGGTTCTGCTGGTTCGACTTGG 25882 Query 147571 CGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCAACG 147630 || ||||| || || ||| |||||||| |||| |||| || |||| || | || | Sbjct 25883 CG-TTGCAGGCATCCTTGTAGAGCATGAACGGCACGCCCGTTTCGATCTGAGACTCCAGA 25941 Query 147631 AT---AAACCTATGCAGGTCCTGCGCTCGCAC----CCGCTGCCGATAGCGGCCCTCGTT 147683 || ||||| ||| |||||||| | || | | |||| ||| | | ||| | Sbjct 25942 ATGGCAAACCA---CAGCTCCTGCGCCTGGACGGTGCGGATGCCCATACC---CTTCGCT 25995 Query 147684 TTCGTACCGCTCGTACAACCGCTCAAACTCGTCGCCGTAGCAATCGGCAAGGCCGGGACA 147743 | |||||| |||||| | | ||| ||||| ||||||| ||| ||| |||||||| Sbjct 25996 T-CGTACCCCTCGTAGAGCTTCTCGAACTCCTCGCCGTGGCAGTCGCTGAGGCCGGGCGT 26054 Query 147744 C-TGATGCGGACACATCAGCGACCACATGTCGTCCGCGTTAACGCGTCGCATAAACAGAT 147802 | || || || | ||| |||| |||| || | || || ||||| ||| || || | Sbjct 26055 CGTGTTGGGGTC-CATGAGCGTCCACTTGCCCTCACTCTTCACGCGCTTCATGAAGAGGT 26113 Query 147803 CCGGCACCCACAGCGCGTACATAAGATCGCGCGCTTTGCAATCCTCGGCGCCCATGTTGC 147862 |||| | ||| |||||||| | || |||||||| ||||| ||| |||||| Sbjct 26114 CCGGGATCCAGAGCGCGTAGAAGAGGTCGCGCGCGCGCTGGTCCTCCTTGCCAGTGTTGC 26173 Query 147863 GTTTCAA-ATTAAGCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGC 147921 | |||| | | | || | | |||||||||||||||| || || | ||| | ||| | Sbjct 26174 GCTTCATGAGCAGGAACTCGA-AGATGTCGGCGTGCCACGGCTCGAGGTACATGGCGAAG 26232 Query 147922 GCACCTTTACGCTTTCCGCC---CTGGTCGACATGGCGCACCATGTTGTTAAACACGCGC 147978 || || || ||||| ||||| ||| || || | ||| || ||||||| ||||||| Sbjct 26233 GCGCCCTTGCGCTTACCGCCGCCCTGATCAACGTAGCGGGCCGTGTTGTTCCACACGCGG 26292 Query 147979 ACCATGGGTTCCAGGCCGCTCGCAGTGCCGTTGGTGGAATTGATCTTGCTGCCGCGGGCT 148038 | ||| || |||||| ||| |||||||||||| ||| | ||||||| || Sbjct 26293 ATCATCGGCATGAGGCCGTTCGACGTGCCGTTGGTGCCCGCGATGTAGCTGCCGGCCGCG 26352 Query 148039 CGCACTTCGTGCACGTTAACGCCAATGCCGCC-GCCGTACTTTGAT-ATGGCAGCGCAAT 148096 || | | ||| | | | |||||||||||| |||| | ||| | || | ||||| | Sbjct 26353 CGGATGTTGTGGATATGGATGCCAATGCCGCCAGCCG--CCTTGCTGATCACGGCGCACT 26410 Query 148097 CGCCCAATGTCGTGTAGATGCCGTCGATGCTGTCGTTTTTGACGCCAAGCAAAAAACACG 148156 | || || ||||||||| ||||||||||||| || | | | || || |||| Sbjct 26411 CCTTCAGCGTGTCGTAGATGCCCTCGATGCTGTCGTCCTTCATCGCGACCAGGAAGCACG 26470 Query 148157 AACACATTTGCGGAATCCGCGTTCCCGCCGAGAAAAGGGTGGGACTCGCGTGCGTAAACA 148216 | | ||| ||||| | | || || || ||| || ||||| | |||||||| || | Sbjct 26471 AGCTCATCTGCGGCTTGGGGGTACCGGCGTTGAAGAGCGTGGGGGTGGCGTGCGTGAAGA 26530 Query 148217 A--TTTTTGAC-TCATCATGCGATACGTCTCAATAGCGTCTTCGATGTCGTCGCCGTGAA 148273 | | ||| | | |||| || || | || || | ||| | |||||| | Sbjct 26531 AGCCCTGCGACATGAGCATG---TATGTGTTGCGGACGCGCTCCAGGTCCTTGCCGTGGA 26587 Query 148274 TGCCCAGCGCGACGCGCATGAGCATGTGCTGTGGTCGTTC 148313 |||| | ||| ||||||| || ||||||||| || || || Sbjct 26588 TGCCAATCGCCACGCGCAGGATCATGTGCTGCGGACGCTC 26627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476593315164720