Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20culicis_20[genbank_20GCA_5F000482145.1_202013-10-25] 3,002 sequences; 23,587,153 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq518 212 7e-50 >seq518 Length=13848 Score = 212 bits (234), Expect = 7e-50 Identities = 410/593 (69%), Gaps = 14/593 (2%) Strand=Plus/Plus Query 146926 TCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGCTTA 146985 ||||||||||| ||| ||||||||||| ||||| ||||| | | ||||| ||||| Sbjct 5434 TCCACGTGGTTCTTGTACACGTGCGCGTCGCCCAGCGTGTGGATGAGCTCCCCGGGCTTC 5493 Query 146986 AGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGG 147045 || || ||| | | ||| | | | || || | | ||| ||| ||||||||||| Sbjct 5494 AGCCCCGTCGCCTTGGCGATGAGGATAGTCAGGAAGGCGTACGAGGCGATGTTGAAGGGC 5553 Query 147046 ACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCC-CCGT---- 147100 || || ||||||||||| | | |||||||||| ||| |||||| ||| Sbjct 5554 ACACCGAGGCCCATGTCGCAGCTGCGCTGGTACAGCATGCAGCTCAGCTCCTGCGTGTTG 5613 Query 147101 -CGGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCC 147159 | |||||| ||||||| |||| ||||||||||||||||||||| | || | Sbjct 5614 GGGTTCACGTAGAACTGGCCGAGGAGGTGGCACGGCGGCAGCGCCATCTTGTCAAGCGCG 5673 Query 147160 GCGGGGTTCCAGGCCGAGACCACCAGCCGCCTG-CTCTCGGGGTTCCTCTTAATCTCTTC 147218 || |||||||| |||| || | |||||| | | | || ||| ||| |||| | | || Sbjct 5674 GCCGGGTTCCACGCCGTGAAGAGCAGCCGGCGGTCGCT-GGGATTCGTCTTGAGCGTCTC 5732 Query 147219 GATAACCCACCTCAGCTGGTCCACGCCCTGGCCCCCGTAGTTTGTC-CCGCAGTCCACGT 147277 || | | | | | |||||| ||||||| ||| ||||| ||||| | || | || Sbjct 5733 GACGATGCGCTTGATCTGGTCGACGCCCTTGCCGTCGTAG-TTGTCGTTGAAGGACGTGT 5791 Query 147278 ACCTGGCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTC 147337 | ||| || ||||| | ||||||||||||||| || ||||||||||| | ||| Sbjct 5792 AGTCGGCGCCGAAGTGGCGCCACTGGAAGCCGTAGACGGGCCCCAGGTC-CATCTCTTCG 5850 Query 147338 T-GTGCGAGAAGCC-CGCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCC 147395 | ||||| || ||| || | | | ||| || || || |||| | ||||||||||| Sbjct 5851 TAGTGCGTGAGGCCGCGGCTG-TCGAGGAAGGCGCGGCTGCCGTTGTCGTCCCAGATGTG 5909 Query 147396 CACTCCCTTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCCCGGATGAACCAGAGCAGCTC 147455 | |||||| | | |||| ||| | || || || || | |||||||| ||||| Sbjct 5910 GATGCCCTTGTCCGCGAGCAGCTTCGCGTTGGTCTCCCCGCGCAGGAACCAGATGAGCTC 5969 Query 147456 CTCCAAAACCCCCCTCCAAAAGACCCTCTTGGTGGTCAGCAGGGGGAACTGGT 147508 |||| | || || | ||| ||||| | ||| || || || || || | ||||| Sbjct 5970 CTCCGACACGCCGCGCCAGAAGACGCGCTTCGTCGTGAGGAGCGGCAGCTGGT 6022 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583466104612800