Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20culicis_20[genbank_20GCA_5F000482145.1_202013-10-25] 3,002 sequences; 23,587,153 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq2 116 1e-20 seq1609 104 7e-17 seq866 89.7 2e-12 >seq2 Length=121565 Score = 116 bits (128), Expect = 1e-20 Identities = 317/481 (66%), Gaps = 6/481 (1%) Strand=Plus/Minus Query 256143 TGCGCAACTCGCAACGATTGGCGCCCATGCCAACCGCCAGCACCGCTCAAATCCTGGGTA 256202 |||||||||||| | | ||||| ||||| |||||| ||| | || || ||||| | Sbjct 25336 TGCGCAACTCGCTGCTCCTCGCGCCGATGCCGACCGCCTCCACGTCGCAGATTCTGGGCA 25277 Query 256203 ACGTGGAAAGCATCGAACCCCTGACTACCAACTTCTTCTCGCGCCGCGTTCGCTCCGGCG 256262 || || || |||| ||| | || ||||| ||| | ||||||||| | ||||| Sbjct 25276 ACAACGAGTGCTTCGAGCCCTTCACCTCCAACATCTACGTGCGCCGCGTGCTGAGCGGCG 25217 Query 256263 AGTTCGCCGTGGTGAACCAGTACTTGGTGGACGACTTGGTACGACTCGGTCTGTGGAACG 256322 ||||| |||| |||||| ||||| | ||| ||| | | | | ||| ||||||| || Sbjct 25216 AGTTCCCCGTTGTGAACAAGTACCTCGTGATGGACCTCATTCAGCGCGGCCTGTGGAGCG 25157 Query 256323 AGAAGATGCAACAACG-CATAATTCGGGCCCGTGGGTCGGTGCAGAACATTGAGCGCTTG 256381 | ||||| | ||||| || || | ||||||||||||||| | | | | Sbjct 25156 ACAAGAT-CCGCAACGAGATCATCACCTTCAACGGGTCGGTGCAGAACGTGATGGACATC 25098 Query 256382 CCGTTCCGCTTGCGCGAGGTATACCGCACGGTATGGGAGATGCCGCAACGATTGTTGGTC 256441 || | |||||||| | |||||||| || |||||||| |||| || | || Sbjct 25097 CCCGCGGACCTGCGCGAGCTCTACCGCACCGTCTGGGAGATCTCGCAGCGCACCCTCATC 25038 Query 256442 GACTTGTGCGC--AGCACGACAACCGTTTGTGGATCAGTCGCAAAGCCTCAACCTCTACT 256499 ||| || ||| || || ||| || | ||||||||||| | | ||| | | | Sbjct 25037 GACATGGCCGCCGCGCGCGGCAA--GTACATTGATCAGTCGCAGTCCATGAACTTGTTCC 24980 Query 256500 TTCCGGTGCCCAACTTTAAACGCTTGACCAACGCACACTTTTACGGGTGGCGAAACGGCC 256559 | | ||| || | | || | ||||| || | ||| ||| | Sbjct 24979 TGGAGAGCCCCTCCTCCGGTCAGATCACGTCCATGCACTTCCACTGCTGGAAGTCCGGGC 24920 Query 256560 TGAAGACGGGCATGTACTACCTGCGCACCCGACCAGCGGCCGACCCGATCCAATTCACCG 256619 | |||||||||||||||||||| |||||||| || || || ||| | ||| | ||||||| Sbjct 24919 TCAAGACGGGCATGTACTACCTCCGCACCCGCCCCGCCGCGGACGCCATCAAGTTCACCG 24860 Query 256620 T 256620 | Sbjct 24859 T 24859 Score = 114 bits (126), Expect = 4e-20 Identities = 490/765 (64%), Gaps = 12/765 (2%) Strand=Plus/Minus Query 254755 CACGCATGCGACCCCGACTCTCTTCACGGCCGGT---CTGAAGCGCCAAACCTTGGCCAG 254811 |||||| || ||||| || ||||||| |||||| | |||| || | || | Sbjct 26526 CACGCACGCCACCCCCACGCTCTTCAACGCCGGTACCCCCAAGCCGCAGA---TGAGCTC 26470 Query 254812 CTGCTACCTACTGACCATCAGTGAAGACAGTATCCAAGGCATCTTCGAAACGCTATCGCG 254871 |||| ||| | | || | || ||||| ||| | ||||||| ||| ||||| | Sbjct 26469 GTGCTTCCTGGTCGCGATGAAGGACGACAGCATCGAGGGCATCTACGACACGCTGAAGGA 26410 Query 254872 ATGCGCATTCGTGAGTCAATCGAGCGGCGGCGTGGGACTCAACATCTCCAACGTGCGCGC 254931 ||||| | | || | || |||||| | || || | ||| |||| | ||||| Sbjct 26409 GTGCGCCGTGATCAGCAAGGCGGCTGGCGGCATTGGCATCCATATCCACAACATCCGCGC 26350 Query 254932 CAGCGGCACACCGATTCGCTCG-ACGAACGG-ACGGAGCGGCGGCATTATACCAATGATC 254989 ||||| || ||| | || ||||| ||| | |||| | || || |||||| Sbjct 26349 GGCCGGCAGCTACAT-CGCGGGCACCAACGGCACGTCGAA-CGGCCTCATGCCGATGATC 26292 Query 254990 CGTGTGTTCAACAACGTGGCTCGCTACGTCGATCAAGGGGGCGGCAAACGCCCAGGAGCG 255049 || |||| |||||| ||| |||||||| ||||| || ||||| || ||| || || Sbjct 26291 CGCGTGTGGAACAACACGGCCCGCTACGTTGATCAGGGCGGCGGTAAGCGCAAGGGCGCC 26232 Query 255050 TTCACCATCTACCTGGAGCCGTGGCACGCCGACATTGAACGGTTTTTACTGCTGTCCGAC 255109 ||| |||| ||||| |||||||||||||||||||| ||| | || || | Sbjct 26231 TTCGCCATGTACCTCGAGCCGTGGCACGCCGACATCTTCGAGTTCCTGCTCATGAAGCGC 26172 Query 255110 AAGACCGGCACCGAGGAGCTGATCGCCCGCGACATCTACACCGCTGTCTGGTGCTGCGAT 255169 || || |||| ||||| | | ||| |||||| ||| | ||| ||||| | || Sbjct 26171 AACACTGGCAAGGAGGACCAGCGCGCGCGCGACCTCTTCTACGCGCTCTGGATCCCGGAC 26112 Query 255170 CTGTTTATGCGACGCGTGGAACGAGACGAGACCTGGAGCCTCATGTGTCCCAACTTATCG 255229 || || ||| |||||| | | || | | |||| |||||| |||||| || Sbjct 26111 CTCTTCATGAAGCGCGTGAAGAGTGAGGGCAAGTGGACGCTCATGGACCCCAACACGACG 26052 Query 255230 CCCGGTCTAGTCGACTCTTGGGGTGACGAGTTTGAAAAACTGTATCTGGAGTACG-AGCG 255288 ||||| || ||||| || || ||||| || || || || || ||||| |||| Sbjct 26051 CCCGGCCTCAGCGACTGCCACGGCGAGGAGTTCGAGAAGCTCTACGAGGGGTACGAAGCG 25992 Query 255289 TGCCGGCCGGTTCGTACGCCAAGTGCCCGCGAAGAAGATCTGGAACACGATGGTGCGCAT 255348 || | | | ||| || | ||| || || | ||| | || || Sbjct 25991 -AAGGGTATGGGCATCCGCACCGTCCAGGCGCAGGAGCTGTGGTTTGCCATTCTGGAGTC 25933 Query 255349 GCAGCTGGAAACCGGAATGCCGTTCCTATTGCACAAAGACCACATAAACGCACGGTCGAA 255408 ||| | ||||| || |||||||| | | |||| || | ||||| |||||| Sbjct 25932 TCAGATCGAAACGGGCGTGCCGTTCATGCTCTACAAGGATGCCTGCAACGCCAAGTCGAA 25873 Query 255409 CCAACGCCACCGCGGTACGATACGCGGCTCGAACCTGTGCACCGAGATTACGTTGCACAC 255468 ||| | ||| ||| || || |||| ||||||||||| ||||| | | |||| Sbjct 25872 CCAGCAGAACCTCGGCACCATCAAGTGCTCTAACCTGTGCACGGAGATCATCGAGTACAC 25813 Query 255469 GTCAGCGCAAGAGGTGGCCGTTTGCAACTTGGCGTCCATCTCGCT 255513 || | | ||| ||| || |||||| |||| || ||| |||| Sbjct 25812 CTCGAAGGACGAGACGGCGGTGTGCAACCTGGCCTCGATCGCGCT 25768 >seq1609 Length=2085 Score = 104 bits (114), Expect = 7e-17 Identities = 145/202 (72%), Gaps = 1/202 (0%) Strand=Plus/Plus Query 443696 CAGCTTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAG 443755 ||||||| ||||| || ||| || || | ||||| || | || || |||| Sbjct 1130 CAGCTTCCAGGAGCGGCTCATCGGCTTCGCGGCCGTCGAGGGCATCTTCTTCTCCGGCTC 1189 Query 443756 CTTTAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTA 443815 ||| || |||||||||||| | || ||||| || | |||| ||| || ||||| || | Sbjct 1190 CTTCTGC-TCCATCTTCTGGCTCAAGAAGCGCGGCGTGATGCCCGGCCTCACCTTCAGCA 1248 Query 443816 ACGAACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCTACACCA 443875 |||| || ||| || |||||||| |||| |||||||||||| || || |||| || Sbjct 1249 ACGAGCTCATCTCGCGCGACGAGGGCCTGCACACCGACTTCGCCTGCCTGCTGTACAACA 1308 Query 443876 AACACATCGTGCACAAGCTGCC 443897 |||||| ||||||||||| Sbjct 1309 GCCACATCAAACACAAGCTGCC 1330 >seq866 Length=6634 Score = 89.7 bits (98), Expect = 2e-12 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 443769 CTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACGAACTGATCAG 443828 ||||||| | || ||||| || | |||| ||| || ||||| || ||||| || ||| Sbjct 1 CTTCTGGCTCAAGAAGCGCGGCGTGATGCCCGGCCTCACCTTCAGCAACGAGCTCATCTC 60 Query 443829 TCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCTACACCAAACACATCGTGCA 443888 || |||||||| |||| |||||||||||| || || |||| || ||||| ||| Sbjct 61 GCGCGACGAGGGCCTGCACACCGACTTCGCCTGCCTGCTGTACAACAGCTACATCAAGCA 120 Query 443889 CAAGCTGCC 443897 ||||||||| Sbjct 121 CAAGCTGCC 129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588274907633890