Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20culicis_20[genbank_20GCA_5F000482145.1_202013-10-25] 3,002 sequences; 23,587,153 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq2 163 4e-35 >seq2 Length=121565 Score = 163 bits (180), Expect = 4e-35 Identities = 673/1050 (64%), Gaps = 35/1050 (3%) Strand=Plus/Plus Query 111053 TCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGA-CTTTCGCGC 111111 || ||||| || || || || | || || || | ||| ||||| || | ||| || Sbjct 25588 TCTGCGAGGCCCTGCACGCCGAGGCCGATGGGGCGGTGGCGCATGTTGCTGCGCTCG-GC 25646 Query 111112 AGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTT 111171 ||||| ||||| || | |||| ||| ||||| ||||| || || | ||| | ||| Sbjct 25647 GGTCTCGACGGGGTAGTAGTTTCGGTCTATGACACGGTTGAGGTTGTAGGTGATCTCCTT 25706 Query 111172 TGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGG 111231 || | |||| || | | ||||| | |||| || ||| |||| | Sbjct 25707 CGTCACCTCATAGAGCCGCTGGTGGTCAAACTCGTTCTTCTCGCGGTTCACAAACTTGGA 25766 Query 111232 AAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAAT 111291 || ||||| || |||| ||||| || |||||||| ||||| |||||||| | || Sbjct 25767 CAGCGCGATCGAGGCCAGGTTGCACACCGCCGTCTCGTCCTTCGAGGTGTACTCGATGAT 25826 Query 111292 TTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTT 111351 || || || | ||| || | ||| || || || | |||| ||||| ||| ||| Sbjct 25827 CTCCGTGCACAGGTTAGAGCACTTGATGGTGCCGAGGTTCTGCTGGTTCGACTTGGCGTT 25886 Query 111352 GCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGC 111411 ||| |||||||||||||||||| | ||| ||||| || |||| || | ||||| || Sbjct 25887 GCAGGCATCCTTGTAGAGCATGAACGGCACGCCCGTTTCGATCTGAGACTCCAGAATGGC 25946 Query 111412 CTTCCA-AACATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTG 111470 ||| | | | ||| |||| || || | || || |||| ||| |||||| Sbjct 25947 AAACCACAGCTCCTGCGCCTGG-ACGGTGCGGATGCCCATACCCTTCGCTTCGTACCCCT 26005 Query 111471 TGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGAC 111530 |||||| || |||||||| || |||| ||| || || | | ||| || Sbjct 26006 CGTAGAGCTTCTCGAACTCCTCGCCGTGGCAGTCGCTGAGGCCGGGCGTCGTGTTGGGGT 26065 Query 111531 AGAAAAGAGACCA-TTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCAC 111589 | || | ||| ||| || | || || || ||||||||||| ||||| || ||||| Sbjct 26066 CCATGAGCGTCCACTTGCCCTCACTCTTC-ACGCGCTTCATGAAGAGGTCCGGGATCCAG 26124 Query 111590 AGGGATGAAAAGAGATCTCTACACCGAGC-CTCTTCGTCACCTTGGTTGAGTCGTAACTC 111648 || | | ||||| || | || || || || | ||||| | || | || Sbjct 26125 AGCGCGTAGAAGAGGTCGC----GCGCGCGCTGGTC--CTCCTTGCCAGTGTTGCGCTTC 26178 Query 111649 A-----AGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCC 111703 | |||||||| | ||| || |||||||| ||||| || || | |||| | ||| Sbjct 26179 ATGAGCAGGAACTCGAAGATGTCGGCGTGCCACGGCTCGAGGTACATGGCGAAGGCGCCC 26238 Query 111704 TTTCG---ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATT 111760 || || || || | |||| || ||||| || ||| ||| | ||||| | ||| Sbjct 26239 TTGCGCTTACCGCCGCCCTGATCAACGTAGCGGGCCGTGTTGTTCCACACGCGGATCATC 26298 Query 111761 GGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTA-TTG------GC 111813 || || | || | || || || || || || ||| || || || Sbjct 26299 GGCATGAGGCCGTTCGACGTGCCGTTGGTGCC-------CGCGATGTAGCTGCCGGCCGC 26351 Query 111814 TCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTC 111873 | | | ||||| || || ||||| || |||||| ||| ||| || ||||| Sbjct 26352 GCGGATGTTGTGGATATGGATGCCAATGCCGCCAGCCGCCTTGCTGATCACGGCGCACTC 26411 Query 111874 CGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACT 111933 | | || || | ||||| || | ||| ||| ||||| | |||| |||||||| Sbjct 26412 CTTCAGCGTGTCGTAGATGCCCTCGATGCTGTCGTCCTTCATCGCGACCAGGAAGCACGA 26471 Query 111934 GGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACAT 111993 | ||||||||| | || ||||| || |||||||| || || || ||||| |||| | Sbjct 26472 GCTCATCTGCGGCTTGGGGGTACCGGCGTTGAAGAGCGTGGGGGTGGCGTGCGTGAAGAA 26531 Query 111994 ACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCC 112053 || || ||||| |||||| | ||| || | ||| | ||||||||||| Sbjct 26532 GCCCTGCGACATGAGCATGTATGTGTTGCGGACGCGCTCCAGGTCCTTGCCGTGGATGCC 26591 Query 112054 GATTGCGACCCGCATGAACATGTACTGTGG 112083 || || || |||| || ||||| ||| || Sbjct 26592 AATCGCCACGCGCAGGATCATGTGCTGCGG 26621 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628008433099200