Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20culicis_20[genbank_20GCA_5F000482145.1_202013-10-25] 3,002 sequences; 23,587,153 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq2 255 7e-63 seq1609 123 3e-23 >seq2 Length=121565 Score = 255 bits (282), Expect = 7e-63 Identities = 898/1382 (65%), Gaps = 38/1382 (3%) Strand=Plus/Plus Query 118120 TGAGATCCTCCACGAGATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCA 118179 |||| ||| |||||| | ||| || ||||| ||||| || || ||| | || Sbjct 25178 TGAGGTCCATCACGAGGTACTTGTTCACAACGGGGAACTCGCCGCTCAGCACGCGGCGCA 25237 Query 118180 GATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGG 118239 ||||| |||| ||| | ||||| |||||||| ||||| |||| || || | |||| Sbjct 25238 CGTAGATGTTGGAGGTGAAGGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGCGACGTGG 25297 Query 118240 AGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTT 118299 |||| || ||||| || || | ||| || ||| || | || ||| | ||| | Sbjct 25298 AGGCGGTCGGCATCGGCGCGAGGAGCAGCGAGTTGCGCATGCCAACCTCCACGACGCGCT 25357 Query 118300 CCTTGAGAGCGTCCCAGTCGTAGTTGAG---CTTTGTCTCCCCCTGCCACATATCAAACT 118356 ||| | || ||||||| || | ||| | | | ||| ||||| || |||| Sbjct 25358 TCTTCAAGGCCGCCCAGTCCCAGCGGCCGCTCTTCGGCGTCTCCTTCCACAGGTCGAACT 25417 Query 118357 GGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCG 118416 | || | || | ||||| || |||| || ||||| || |||||||| ||| ||| Sbjct 25418 GCAGCAGCCCCTTCGACGCGGGGCTGCCCTGGAACGTCTCGTAGGGGCCCTCCACCGCCG 25477 Query 118417 CCAATTC---GGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCAT 118473 ||| || |||| | ||| | || ||| || || || || || ||| | | Sbjct 25478 CCAGGTCCACGGAG---GACTCCACCGCGCCGTAGTAGATGGTCTCGAAGATGTCCTCGT 25534 Query 118474 TCATTGCCTTGGCCTCGTCGGAATCA--AACGCGAGTCGGCACAAAATAAATACATCCGC 118531 | | || ||||| ||| || || | ||| ||| || || | || || Sbjct 25535 TGAGGCGCTGCGCCTC--CGGGCTCGTGAAGGAGAGCCGGAGCAGGCAGAAGGCGTCTGC 25592 Query 118532 GAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTC---CGAGCGGT 118588 ||| || || || |||||||| || ||||| || | ||| || || | || ||||| Sbjct 25593 GAGGCCCTGCACGCCGAGGCCGATGGGGCGGTGGCGCATGTTG--CTGCGCTCG-GCGGT 25649 Query 118589 CTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGT 118648 ||| ||||| || | || | || || || | || || || | ||||| |||| || Sbjct 25650 CTCGACGGGGTAGTAGTTTCGGTCTATGACACGGTTGAGGTTGTAGGTGATCTCCTTCGT 25709 Query 118649 GATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAG 118708 | |||| ||| | || ||||| | |||| || ||| |||| | || Sbjct 25710 CACCTCATAGAGCCGCTGGTGGTCAAACTCGTTCTTCTCGCGGTTCACAAACTTGGACAG 25769 Query 118709 GGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTC 118768 ||||| || ||||| || ||||| | ||||| ||||| |||||||| || || || Sbjct 25770 CGCGATCGAGGCCAGGTTGCACACCGCCGTCTCGTCCTTCGAGGTGTACTCGATGATCTC 25829 Query 118769 CGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACA 118828 |||||||| ||| || | ||| |||||||| | ||||| || || ||||| | ||| || Sbjct 25830 CGTGCACAGGTTAGAGCACTTGATGGTGCCGAGGTTCTGCTGGTTCGACTTGGCGTTGCA 25889 Query 118829 CGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTT 118888 ||||||||||| |||||| | ||| ||||| || | || |||| ||||| || Sbjct 25890 GGCATCCTTGTAGAGCATGAACGGCACGCCCGTTTCGATCTGAGACTCCAGAATGGCAAA 25949 Query 118889 CCAGA-CATCGGCAGCTGGCACAGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTTTGTGT 118947 ||| | | | || |||| || ||| | || | |||| | |||||| || Sbjct 25950 CCACAGCTCCTGCGCCTGG-ACGGTGCGGATGCCCATACCCTTCGCTTCGTACCCCTCGT 26008 Query 118948 AGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGA 119007 |||| || ||||| || || | || ||| || || | | | | ||| | Sbjct 26009 AGAGCTTCTCGAACTCCTCGCCGTGGCAGTCGCTGAGGCCGGGCGTCGTGTTGGGGTCCA 26068 Query 119008 AGAGAGACCA-TTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGC 119066 ||| | ||| ||| || | ||| || || ||||||||||||||||| |||||||||||| Sbjct 26069 TGAGCGTCCACTTGCCCTCACTCTTC-ACGCGCTTCATGAAGAGGTCCGGGATCCAGAGC 26127 Query 119067 GCCGAGAAGAGATCCCGACAGCG-AGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAA 119125 || ||||||| || || ||| | | || | | || || ||| | || || Sbjct 26128 GCGTAGAAGAGGTCGCGCGCGCGCTGGTCCTCCTTGCCAGTG-TTGCGCTTCATGAGCAG 26186 Query 119126 AAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACG--- 119182 || || | ||| || ||||||||||| || ||||||| |||| | ||||| || Sbjct 26187 GAACTCGAAGATGTCGGCGTGCCACGGCTCGAGGTACATGGCGAAGGCGCCCTTGCGCTT 26246 Query 119183 ACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGAT 119242 || || |||| | || || | || ||| ||| | || || | ||| || |||| Sbjct 26247 ACCGCCGCCCTGATCAACGTAGCGGGCCGTGTTGTTCCACACGCGGATCATCGGCATGAG 26306 Query 119243 ACCATCGGATTGGCCATTTGT-CCCCCGA-ATACGAGACTTATTGGCTCTGACATCGTGG 119300 || | || ||| || || ||| ||| || | | || | || | |||| Sbjct 26307 GCCGTTCGACGTGCCGTTGGTGCCCGCGATGTAGCTGCC--GGCCGCGCGGATGTTGTGG 26364 Query 119301 ATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCG 119360 || || || ||||| || || ||| ||| ||| ||||||||| | || || || Sbjct 26365 ATATGGATGCCAATGCCGCCAGCCGCCTTGCTGATCACGGCGCACTCCTTCAGCGTGTCG 26424 Query 119361 TAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGC---AGCTCGACATTTGA 119417 ||||| || ||||| ||| |||| | |||| ||||||| |||| ||| || Sbjct 26425 TAGATGCCCTCGATGCTGTCGTCCTTCATCGCGACCAGGAAGCACGAGCT---CATCTGC 26481 Query 119418 GGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCTTGGGAC 119477 ||| |||| ||||| ||||||||||| || || || ||||| |||| | || || ||| Sbjct 26482 GGCTTGGGGGTACCGGCGTTGAAGAGCGTGGGGGTGGCGTGCGTGAAGAAGCCCTGCGAC 26541 Query 119478 AT 119479 || Sbjct 26542 AT 26543 >seq1609 Length=2085 Score = 123 bits (136), Expect = 3e-23 Identities = 342/514 (67%), Gaps = 14/514 (3%) Strand=Plus/Minus Query 129742 CTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATAAAATCAAATGGGTT 129801 ||||||||||||||| ||||| ||| | | ||| ||||||| || || || ||||| Sbjct 1568 CTTCTCGAAGAAGTTGGTCTTGCCGGTGAGGGAGATCATCTCCATGAAGTCGAAGGGGTT 1509 Query 129802 CTTTGAGTTCCAAATTGCTGG--CACTCCAATCTGTTTGAGGAGACGATCCGAGACGTAC 129859 | ||||| | |||| || || | | ||| || || |||| |||| || Sbjct 1508 GGTGGAGTTGTAG--TGCTTCTCCAGGCCCAGCGACACGAGCAGGCGGTCCGCGACGAAC 1451 Query 129860 TCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACATGGG-AGCGCGTC 129918 || ||||||| ||| |||| |||||| ||||||||| || ||| |||||||| Sbjct 1450 TCGATGTACTGGCTCATGAGGTCGGCGTTCATGCCGATGAGGCG-CACGGGCAGCGCGTC 1392 Query 129919 CAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTGAATGGTCTC-CG 129977 |||||||| ||||||| ||| | || || || | |||| | | | | ||| || Sbjct 1391 GCAGATGAACTCCTTCTCGATGACGACGGCGTCGGTGATGATGTCCAGCACGCGCTCGCG 1332 Query 129978 TGCCAG---GTCTATTGCGCAAAGTCTTGAAGAGTTCCACGGCAAACTCCTGGTGGAGAC 130034 | ||| || | ||| | ||| | || ||| || || ||| || | Sbjct 1331 CGGCAGCTTGTGT-TTGATGTGGCTGTTGTACAGCAGGCAGGCGAAGTCGGTGTGCAGGC 1273 Query 130035 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 130094 ||||||| || |||||||| || || |||| || || ||||| | || ||||||| Sbjct 1272 CCTCGTCGCGCGAGATGAGCTCGTTGCTGAAGGTGAGGCCGGGCATCACGCCGCGCTTCT 1213 Query 130095 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACG 130154 | | |||||| || | || || ||||| ||||||||||| ||||| || |||||| Sbjct 1212 TGAGCCAGAAGATGGAGCAGAAGGAGCCGGAGAAGAAGATGCCCTCGACGGCCGCGAAGC 1153 Query 130155 CAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGCCCACTGCG 130214 | | ||| ||||| ||| | | | | || | | ||| || ||||| | | Sbjct 1152 CGATGAGCCGCTCCTGGAAGCTG-GCGGCGCTG--CCGATCCAGCGCACGGCCCAGTTGG 1096 Query 130215 CCTTTTTCTCGATACACGGGACGGTCTGGATCGC 130248 |||| |||| ||| || |||| ||||||||| || Sbjct 1095 CCTTCTTCTGGATGCAGGGGATGGTCTGGATGGC 1062 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618411993219120