Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20culicis_20[genbank_20GCA_5F000482145.1_202013-10-25] 3,002 sequences; 23,587,153 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq2 194 2e-44 seq1609 111 2e-19 >seq2 Length=121565 Score = 194 bits (214), Expect = 2e-44 Identities = 893/1397 (64%), Gaps = 36/1397 (3%) Strand=Plus/Minus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 || ||| ||||| || |||||||||| || || || || || | ||| | || ||| Sbjct 26621 CCGCAGCACATGATCCTGCGCGTGGCGATTGGCATCCACGGCAAGGACCTGGAGCGCGTC 26562 Query 104282 TTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTC 104341 | |||||| ||||| || || | |||| ||||| || || || |||||| Sbjct 26561 CGCAACACATACATGCTCATGTCGCAGGGCTTCTTCACGCACGCCACCCCCACGCTCTTC 26502 Query 104342 AATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGAC 104401 || || ||||| || | || || ||| | |||||||| |||| | ||||| ||| Sbjct 26501 AACGCCGGTACCCCCAAGCCGCAGATGAGCTCGTGCTTCCTGGTCGCGATGAAGGACGAC 26442 Query 104402 TCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGG 104461 ||| | || ||||| | || || | |||||| || ||| ||| |||||| Sbjct 26441 AGCATCGAGGGCATCTACGACACGCTGAAGGAGTGCGCCGTGATCAGCAAGGCGGCTGGC 26382 Query 104462 GGTATTGGGATGCACATCCATGATGTGAGAGC------CAA-TAAATCTCGTATTCGGGG 104514 || ||||| || || ||||| | | | || || || ||| || || Sbjct 26381 GGCATTGGCATCCATATCCACAACATCCGCGCGGCCGGCAGCTACATCGCG-------GG 26329 Query 104515 GACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCG 104574 || || || || | || | || || ||| | ||||| | ||| ||| || || Sbjct 26328 CACCAACGGCACGTCGAACGGCCTCATGCCGATGATCCGCGTGTGGAACAACACGGCCCG 26269 Query 104575 CTATGTAAATCAAGCTGGGCGT---CGAAAGGGATCTATCGCAGTCTATCTTGAGCCATG 104631 ||| || |||| | || || || ||||| | |||| | || || ||||| || Sbjct 26268 CTACGTTGATCAGGGCGGCGGTAAGCGCAAGGGCGCCTTCGCCATGTACCTCGAGCCGTG 26209 Query 104632 GCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCG 104691 |||||| || ||| | |||||||| || | |||| || | ||||| ||| Sbjct 26208 GCACGCCGACATCTTCGAGTTCCTGCTCATGAAGCGCAACACTGGCAAGGAGGACCAGCG 26149 Query 104692 GTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGA 104751 ||||| ||||||| ||| |||||||| || || |||||||||||| | | ||| || Sbjct 26148 CGCGCGCGACCTCTTCTACGCGCTCTGGATCCCGGACCTCTTCATGAAGCGCG-TGAAGA 26090 Query 104752 GAG-TGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGA-TGCCGTG 104809 | | ||||| ||| | ||| | || ||| | | || || ||| ||| |||| Sbjct 26089 GTGAGGGCAAGTGGACGCTCATGGACCCCAACACGACGCCCGGCCTCAGCGACTGCC-AC 26031 Query 104810 GGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGT-CGGGCGACTGCGAC 104868 || |||||||| || || ||| |||||| | | ||| |||| | || || Sbjct 26030 GGCGAGGAGTTCGAGAAGCTCTACGAGGGGTACGAAGCGAAGGGTATGGGCATCCGC-AC 25972 Query 104869 GGTGCCAGCTGC-CGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACAC 104927 || |||| || || ||||| || ||||| ||||||| | ||| || || | Sbjct 25971 CGT-CCAGGCGCAGGAGCTGTGGTTTGCCATTCTGGAGTCTCAGATCGAAACGGGCGTGC 25913 Query 104928 CATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGA 104987 | | |||||| ||||| || ||||| ||| ||| || || |||| | || | Sbjct 25912 CGTTCATGCTCTACAAGGATGCCTGCAACGCCAAGTCGAACCAGCAGAACCTCGGCACCA 25853 Query 104988 TCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTG 105047 ||||| | || || || || || || ||| | || | || || || |||||||| | Sbjct 25852 TCAAGTGCTCTAACCTGTGCACGGAGATCATCGAGTACACCTCGAAGGACGAGACGGCGG 25793 Query 105048 TGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTG 105107 |||| ||||| || || ||||| || |||||| |||| | | |||| || |||| Sbjct 25792 TGTGCAACCTGGCCTCGATCGCGCTGTCCAAGTTTGTGAACCGCGAGAAGAACGAGTTTG 25733 Query 105108 ATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTG 105167 | | | ||| | || || ||||| ||||| | ||||| ||| | || || | Sbjct 25732 ACCACCAGCGGCTCTATGAGGTGACGAAGGAGATCACCTACAACCTCAACCGTGTCATAG 25673 Query 105168 ATAGAAATTTTTACCCCGTTGAGACTG-CTCGTAAATCTAATATGAGACACCGTCCAATT 105226 | |||| | |||||||| ||||| | | | | | || ||| | ||||| || || Sbjct 25672 ACCGAAACTACTACCCCGTCGAGACCGCCGAGCGCAGC-AACATGCGCCACCGCCCCATC 25614 Query 105227 GGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATT--TGATT 105284 || ||||| || ||||| ||||| || | ||| || || | | | || || Sbjct 25613 GGCCTCGGCGTGCAGGGCCTCGCAGACGCCTTCTGCCTGCTCCGGCTCTCCTTCACGAGC 25554 Query 105285 CCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTG 105344 ||| || ||| || |||| | | ||| || |||||||| || ||| ||| | | Sbjct 25553 CCG--GAGGCGCAGCGCCTCAACGAGGACATCTTCGAGACCATCTACTACGGCGCGGTGG 25496 Query 105345 AGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAG 105404 || | || |||| | ||| || || || || || || || |||| || | Sbjct 25495 AGTCCTCCGTGGACCTGGCGGCGGTGGAGGGCCCCTACGAGACGTTCCAGGGCAGCCCCG 25436 Query 105405 CTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGA-GACCAAG---CTTCACTAC 105460 | || | ||| |||| || || || ||| |||||| || | | ||| | || Sbjct 25435 CGTCGAAGGGGCTGCTGCAGTTCGACCTGT-GGAAGGAGACGCCGAAGAGCGGCCGCTGG 25377 Query 105461 GACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATG 105520 ||||||| || | ||| | ||| || |||| || | || ||| || ||| | Sbjct 25376 GACTGGGCGGCCTTGAAGAAGCGCGTCGTGGAGGTTGGCATGCGCAACTCGCTGCTCCTC 25317 Query 105521 GCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCC 105580 || || ||||| || |||||||| | || || |||| || || || ||||| || ||| Sbjct 25316 GCGCCGATGCCGACCGCCTCCACGTCGCAGATTCTGGGCAACAACGAGTGCTTCGAGCCC 25257 Query 105581 TACACGACGAACATCTA 105597 | ||| | |||||||| Sbjct 25256 TTCACCTCCAACATCTA 25240 >seq1609 Length=2085 Score = 111 bits (122), Expect = 2e-19 Identities = 109/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 94804 GAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCT 94863 ||||| ||| ||| || ||| || ||||| ||||||||||| || ||||||||| | Sbjct 1140 GAGCGGCTCATCGGCTTCGCGGCCGTCGAGGGCATCTTCTTCTCCGGCTCCTTCTGCTCC 1199 Query 94864 ATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATC 94923 || | |||||||||||||| || | ||||| || ||| |||| ||||||||| ||| Sbjct 1200 ATCTTCTGGCTCAAGAAGCGCGGCGTGATGCCCGGCCTCACCTTCAGCAACGAGCTCATC 1259 Query 94924 TCTCGTGACGAGGGACTCCAC 94944 || || |||||||| || ||| Sbjct 1260 TCGCGCGACGAGGGCCTGCAC 1280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583238913138480