Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20culicis_20[genbank_20GCA_5F000482145.1_202013-10-25] 3,002 sequences; 23,587,153 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq2 250 3e-61 seq655 116 4e-21 seq227 105 7e-18 >seq2 Length=121565 Score = 250 bits (276), Expect = 3e-61 Identities = 473/687 (69%), Gaps = 12/687 (2%) Strand=Plus/Minus Query 53272 CTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAG 53331 ||| ||||||||||| || || || |||||||| ||||| | || |||||| || Sbjct 26529 CTTCACGCACGCCACCCCCACGCTCTTCAACGCCGGTACCCCCAAGCCGCAGATG---AG 26473 Query 53332 CT---GCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAA 53388 || |||||||||| ||||||||||| ||| ||||| ||||||||||| ||||| || Sbjct 26472 CTCGTGCTTCCTGGTCGCGATGAAGGACGACAGCATCGAGGGCATCTACGACACGCTGAA 26413 Query 53389 GGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCACTGCTCGAACGTCCG 53448 |||||| ||| ||| |||| | | || || || || ||||| | ||| |||| Sbjct 26412 GGAGTGCGCCGTGATCAGCAAGGCGGCTGGCGGCATTGGCATCCATATCCACAACATCCG 26353 Query 53449 TGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGAT-GGAATCGTGCCTATGC 53507 ||| ||||| ||| ||| || |||||| || ||| || || |||| ||| Sbjct 26352 CGCGGCCGGCAGCTACATCGCGGGCACCAACGGCA-CGTCGAACGGCCTCATGCCGATGA 26294 Query 53508 TCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGT 53567 ||||||| | |||||||||||||| ||||| | ||||| || || ||||||||||| Sbjct 26293 TCCGCGTGTGGAACAACACGGCCCGCTACGTTGATCAGGGCGGCGGTAAGCGCAAGGGCG 26234 Query 53568 CGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTC 53627 | |||||||| |||||||||||||||||||||||||| | ||||| || || | Sbjct 26233 CCTTCGCCATGTACCTCGAGCCGTGGCACGCCGACATCTTCGAGTTCCTGCTCATGAAGC 26174 Query 53628 TGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT-TACAGCTCTGTGGATTCCG 53686 || || | || || |||| || ||||| || ||| || || ||||| ||| Sbjct 26173 GCAACACTGGCAAGGAGGACCAGCGCGCGCGCGACCTCTTCTAC-GCGCTCTGGATCCCG 26115 Query 53687 GACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAACGAG 53746 |||||||||||| | ||| ||| || | ||||| || ||| ||| ||| | Sbjct 26114 GACCTCTTCATGAAGCGCGTGAAGAGTGAGGGCAAGTGGACGCTCATGGACCCCAACACG 26055 Query 53747 TGCCCCGGCCTCCAGGGTGT-CTACGGTGAGGAGTTTAACGAGATGTATCGGACGTACGC 53805 |||||||| ||| | | | |||| |||||||| | || | || | ||||| Sbjct 26054 ACGCCCGGCCT-CAGCGACTGCCACGGCGAGGAGTTCGAGAAGCTCTACGAGGGGTACGA 25996 Query 53806 AGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTATGGGATGCAATCCTCAA 53865 || |||| || | ||| |||||| ||| | ||| ||| || || | Sbjct 25995 AGCGAAGGGTATGGGCATCCGCACCGTCCAGGCGCAGGAGCTGTGGTTTGCCATTCTGGA 25936 Query 53866 GAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATTCGGTCAACGAGAAGAG 53925 | ||| | || ||||| ||||| |||| |||||||||| | ||||| ||| Sbjct 25935 GTCTCAGATCGAAACGGGCGTGCCGTTCATGCTCTACAAGGATGCCTGCAACGCCAAGTC 25876 Query 53926 CAACCAGAAGAACATCGGCGTCATCAA 53952 |||||| ||||| ||||| |||||| Sbjct 25875 GAACCAGCAGAACCTCGGCACCATCAA 25849 Score = 138 bits (152), Expect = 1e-27 Identities = 309/458 (67%), Gaps = 7/458 (2%) Strand=Plus/Minus Query 55478 GGCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATG 55537 ||| | |||||||| |||||| | ||||| ||||| ||||| || ||| | ||||| || Sbjct 25340 GGCATGCGCAACTCGCTGCTCCTCGCGCCGATGCCGACCGCCTCCACGTCGCAGATTCTG 25281 Query 55538 GGCAACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCG-GACCCTAGC 55596 |||||||||||| |||||||| | ||| ||||||||||| ||||||| | | ||| Sbjct 25280 GGCAACAACGAGTGCTTCGAGCCCTTCACCTCCAACATCTACGTGCGCCGCGTGCTGAGC 25221 Query 55597 AGGTGAGTTTGTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTG 55656 || ||||| | | | |||||| ||||||| | |||||| || | | ||| Sbjct 25220 -GGCGAGTTCCCCGTTGTGAACAAGTACCTCGTGATGGACCTCATTCAGCGCGGCCTGTG 25162 Query 55657 GAACCCGCAGATCAAGACGGATATTGTGCGGAACGGGGGGTCCGTCCAGAA---TCTGGA 55713 || | ||||| | || || | | ||||| || ||||| |||| Sbjct 25161 GAGCGACAAGATCCGCAACGAGATCATCACCTTCAACGGGTCGGTGCAGAACGTGATGGA 25102 Query 55714 GATTCCTCTGCGTCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCT 55773 || || | || ||| | ||||| || || |||||||| | ||| | || Sbjct 25101 CATCCCCGCGGACCTGCGCGAGCTCTACCGCACCGTCTGGGAGATCTCGCAGCGCACCCT 25042 Query 55774 GATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTT 55833 || |||||| || | || || |||||| || ||||| ||||| ||||| | || Sbjct 25041 CATCGACATGGCCGCCGCGCGCGGCAAGTACATTGATCAGTCGCAGTCCATGAACTTGTT 24982 Query 55834 CATGGAGA-ATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGG 55892 | |||||| ||| | | || | || | | || |||||||| || | |||||| | Sbjct 24981 CCTGGAGAGCCCCTCCTCCGGTC-AGATCACGTCCATGCACTTCCACTGCTGGAAGTCCG 24923 Query 55893 GACTCAAGACGGGTATGTACTATCTGCGGACCCGCGCC 55930 | ||||||||||| |||||||| || || |||||| || Sbjct 24922 GGCTCAAGACGGGCATGTACTACCTCCGCACCCGCCCC 24885 >seq655 Length=10332 Score = 116 bits (128), Expect = 4e-21 Identities = 192/275 (70%), Gaps = 9/275 (3%) Strand=Plus/Minus Query 124563 AGCCACATGGCTTGGACGTAGTCCTCTGCGTGCCCCCAGTCGCGCTTGGCATCCAGGTTT 124622 ||||||||| | | |||||||||| ||||| |||||||| ||| || | || || Sbjct 2494 AGCCACATGCCGTAAACGTAGTCCTTCGCGTGGCCCCAGTCCCGCAGCGCGTTCACATTG 2435 Query 124623 CCGAGCTCGA-----TTGGCTTGGCCGT-CTTGTTCCACTCCGCCAAACCCAGTGTAATC 124676 |||||| | | || || ||||| ||| | | | ||||| | || |||| Sbjct 2434 CCGAGCGCCAGATCCTTCTGTTTGCCGTACTTAATGCGCACCGCCGCGCGCAC---AATC 2378 Query 124677 TTGCGCGTCACAAACTCGGAACCGCGTCGCTCAGACTCGTGGTTGAACAGAATGCCAGTA 124736 || |||||| || || ||||| ||| |||||||||||||| |||||||| | Sbjct 2377 TTCTTCGTCACGAATGTGGCGCCGCGGCGCGGCGACTCGTGGTTGAAGAGAATGCCGTTG 2318 Query 124737 CACGCAAACATCCCGTACGACTCGCGGTAGTTTTTCGTCATCCAATACCCAAAGAGCTTG 124796 |||||||| || |||| |||||||||||| || ||||| || || | ||||| Sbjct 2317 GCGGCAAACATACCATACGCCTCGCGGTAGTTGACGGTGATCCAGTAGCCGTACAGCTTC 2258 Query 124797 GACACGCCATAGGGGCTTCGGGGGTAGAATGGGGT 124831 | || | |||||||| ||||||||||| || || Sbjct 2257 GCAACCGCGTAGGGGCTGCGGGGGTAGAAGGGCGT 2223 >seq227 Length=26954 Score = 105 bits (116), Expect = 7e-18 Identities = 207/303 (68%), Gaps = 10/303 (3%) Strand=Plus/Plus Query 152028 CGTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTG 152087 ||| |||||||| || | | ||| |||||||| || ||||||||| || ||||| Sbjct 16690 CGTAAAGATGTACCGCGCGGCGGCGTGGTCCTTGCCGCCCTGCAGCCGCGTACCGAACTG 16749 Query 152088 TCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCAC 152147 || ||| || || | ||||||| |||||||| ||||| |||| || Sbjct 16750 ACCGTCCGGCCGCAGCAGCGGCACGTTGTTGCTCCCCACGAAGTTCTGCGCCATGCCGAC 16809 Query 152148 AATCGTGCCCTGCA-----GACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATG 152202 ||||| ||| | |||| ||| | || ||||| || || | ||||||| | | Sbjct 16810 GATCGT---CTGGATGAGCGACT-GCT-CGCCATGGTGGTAGGCAGAGTGCTCCGACACG 16864 Query 152203 TATCCCGCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAA 152262 || || | || |||| ||||||| || || | |||||||| ||| || |||| | | Sbjct 16865 TACCCGGACAGCTGCACCACCTTGATCGCCTTGGTCAGGTTGCGCTTCAGGCAGGAGAAG 16924 Query 152263 ATCACCTTGCGCTGGGATGGTTTCAAACCGTCCACCACGTGAGGAATCGAACGCTTGATG 152322 | | |||||||||| || || || ||||||||| || ||||||||||||| | | Sbjct 16925 AGGATCTTGCGCTGGCCGGGCTTGAAGCCGTCCACCGCGCTCGGAATCGAACGCTCGCAG 16984 Query 152323 TCC 152325 ||| Sbjct 16985 TCC 16987 Score = 102 bits (112), Expect = 9e-17 Identities = 187/272 (69%), Gaps = 4/272 (1%) Strand=Plus/Plus Query 117332 TCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAGGTTG 117391 |||||||| || || ||||||||||| || || |||| || || || |||| Sbjct 16718 TCCTTGCCGCCCTGCAGCCGCGTACCGAACTGACCGTCCGGCCGCAGCAGCGGCACGTTG 16777 Query 117392 TTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTACCTTG--GAGGCTCGCCTCAC 117449 ||| ||||| ||||| || |||| | ||| ||||| || | ||| | ||| | Sbjct 16778 TTGCTCCCCACGAAGTTCTGCGCCATGCCGACGATCGT--CTGGATGAGCGACTGCTCGC 16835 Query 117450 CATGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAGCTGAGCCACCTTCATGTCTG 117509 ||||||| || || | ||||||| |||||| || | |||||| ||||||| || | Sbjct 16836 CATGGTGGTAGGCAGAGTGCTCCGACACGTACCCGGACAGCTGCACCACCTTGATCGCCT 16895 Query 117510 ACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGCGCTGACTTGGCTTCAGACCAT 117569 |||||||| ||| ||||||| | | | ||||||||| | ||||| | || | Sbjct 16896 TGGTCAGGTTGCGCTTCAGGCAGGAGAAGAGGATCTTGCGCTGGCCGGGCTTGAAGCCGT 16955 Query 117570 CCGCCACGTGAGGGATCGAACGCTTGATGTCC 117601 || || || || |||||||||| | |||| Sbjct 16956 CCACCGCGCTCGGAATCGAACGCTCGCAGTCC 16987 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547195465719600