Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20culicis_20[genbank_20GCA_5F000482145.1_202013-10-25] 3,002 sequences; 23,587,153 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq2 246 3e-60 seq782 170 2e-37 seq455 170 2e-37 seq257 170 2e-37 seq2803 167 3e-36 seq36 154 2e-32 >seq2 Length=121565 Score = 246 bits (272), Expect = 3e-60 Identities = 1073/1666 (64%), Gaps = 70/1666 (4%) Strand=Plus/Plus Query 80035 CGCGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATA 80094 || || || || |||||||||||||||||||| || |||||||| || | |||||| Sbjct 24889 CGGGTGCGGAGGTAGTACATGCCCGTCTTGAGCCCGGACTTCCAGCAGTGGAAGTGCATG 24948 Query 80095 GAACTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAG 80154 || ||| || | | |||| |||||| ||| | ||||| ||||| |||||| Sbjct 24949 GACGTGATCTGACCGGAGGAGGGGCTCTCCAGGAACAAGTTCATGGACTGCGACTGATCA 25008 Query 80155 ATGAAAGCCCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCATACT 80214 ||| | || || | || ||||| || || | | || | || ||||| || Sbjct 25009 ATGTACTTGCCGCGCGCGGCGGCCATGTCGATGAGGGTGCGCTGCGAGATCTCCCAGACG 25068 Query 80215 GTACGATACACCTTACGAAGCTCCTCTGGAATGTCCAGATTTTGCACACTGCCACCGTCC 80274 || || || | || || || ||| | || ||||||| | | |||| |||| || Sbjct 25069 GTGCGGTAGAGCTCGCGCAGGTCCGCGGGGATGTCCA----TCACGTTCTGC-ACCGACC 25123 Query 80275 TTTACAATTTGATTTT-TCAATTCAGA------CG-TCCAGACACCAAGCTTGTGCAGAT 80326 | || |||| | || | | || || |||| | || ||| || | Sbjct 25124 CGTTGAAGGTGATGATCTCGTTGCGGATCTTGTCGCTCCACAGGCCGCGCTGAATGAGGT 25183 Query 80327 CTTTCACAAGGTGCTTGTTAATCATGACAAACTCTCCCGCGAGGGTGCGACGCAGATACA 80386 | |||| |||| |||||| | | | ||||| || || ||| |||| || | Sbjct 25184 CCATCACGAGGTACTTGTTCACAACGGGGAACTCGCCGCTCAGCACGCGGCGCACGTAGA 25243 Query 80387 GGTTTGTAGTGTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTGCTCGCCG 80446 ||| | ||| | ||||| || ||||||||| || || ||||| | |||| || | Sbjct 25244 TGTTGGAGGTGAAGGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGCGACGTGGAGGCGG 25303 Query 80447 TCGGCATCGGGCCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGATATCCTCGCGCA 80506 |||||||||| ||| | ||| || || |||| ||| || | || || || Sbjct 25304 TCGGCATCGGCGCGAGGAGCAGCGAGTTGCGCATGCCAACCTCCACGACGCGCTTCTTCA 25363 Query 80507 AATCTGACCAAAA--ATCAACCCCAA--CGCTGTGACC--CCACATGTCGTGCTGCAAGA 80560 | | | ||| | | || | || || || ||||| |||| ||||| | Sbjct 25364 AGGCCGCCCAGTCCCAGCGGCCGCTCTTCGGCGTCTCCTTCCACAGGTCGAACTGCAGCA 25423 Query 80561 TGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCTTGGCCAGCT 80620 |||| |||||| || ||| |||||||||||| ||||||||| | ||||| | Sbjct 25424 GCCCCTTCGACGCGGGGCTGCCCTGGAACGTCTCGTAGGGGCCCTCCACCGCCGCCAGGT 25483 Query 80621 C-AC--ACGACTCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTTCACAC 80677 | || | ||||||| || ||| || ||| ||| |||| | ||| ||| | | Sbjct 25484 CCACGGAGGACTCCACC---GCGCCGTAGTAGATGGTCTCGAAGATGTCCTCGTTGAGGC 25540 Query 80678 CGCGCGCCTGTGGG-TCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGGCCC 80736 |||||| ||| |||| ||| || | | | || ||| |||| || |||||| Sbjct 25541 GCTGCGCCTCCGGGCTCGT-GAAGGAGAGCCGGAGCAGGCAGAAGGCGTCTGCGAGGCCC 25599 Query 80737 TGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGATCGCTCGGCCTCCGGAATTGGG 80796 || ||||||| | |||| |||||||||||| |||| |||||||| | | ||| Sbjct 25600 TGCACGCCGAGGCCGATGGGGCGGTGGCGCATGTTGCTGCGCTCGGCGGTCTCGACGGGG 25659 Query 80797 TAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGTAACATCATGA 80856 || |||| || ||||| ||||| |||||| || | || || || |||| Sbjct 25660 TAGTAGTTTCGGTCTATGACACGGTTGAGGTTGTAGGTGATCTCCTTCGTCACCTCATAG 25719 Query 80857 AGTTTCTGAAAGTCGAATTGGTTCCCCT------TCACAAATGCCGGAAGGCTC-AGGGA 80909 || ||| ||| || | |||| || ||||||| ||| || | | || Sbjct 25720 AGCCGCTGGTGGTCAAACTCGTTCTTCTCGCGGTTCACAAACTT-GGACAGCGCGATCGA 25778 Query 80910 CGCCAGATTGCACACGGCCACCTCTTCAGCATCT--GTAAACTCGACGATTTCCGTGCAC 80967 ||||| |||||||| ||| ||| || | || || |||||| ||| ||||||||| Sbjct 25779 GGCCAGGTTGCACACCGCCGTCTCGTC--CTTCGAGGTGTACTCGATGATCTCCGTGCAC 25836 Query 80968 AAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTCC 81027 | ||||| |||| || || || ||||| | |||||| |||||||||||||| || ||| Sbjct 25837 AGGTTAGAGCACTTGATGGTGCCGAGGTTCTGCTGGTTCGACTTGGCGTTGCAGGCATCC 25896 Query 81028 TTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAAATC 81087 |||||| |||| |||| || || |||| ||| |||| || ||||| ||| | | Sbjct 25897 TTGTAGAGCATGAACGGCACGCCCGTTTCGATCTGAGACTCCAGAATGGCAAACCACAGC 25956 Query 81088 TCGCGCGCCTTGACCACCTTGCGGA----ATTTGCCTTCGGCCACATACTTGGCGTA-AG 81142 || |||||| | || |||||| | ||||| || | ||| |||| || Sbjct 25957 TCCTGCGCCTGG---ACGGTGCGGATGCCCATACCCTTC-GCTTCGTACCCCTCGTAGAG 26012 Query 81143 CTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCA 81202 |||| ||||||| | ||||| || ||||| | || | ||| ||| ||| | Sbjct 26013 CTTC-TCGAACTCCTCGCCGTGGCAGTCGCTGAGGCCGGGCGTCGTGTTGGGGTCCATGA 26071 Query 81203 GGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGG 81262 | ||| | | || ||| || ||||||||| ||| ||||||||||| ||| Sbjct 26072 GCGTCCACTTGCCCTCACTCTTCACGCGCTTCATGAAGAGGTCCGGGATCCAGAGCGCGT 26131 Query 81263 TGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGT 81322 ||| |||||||| |||| ||||| | || |||| | || || || | Sbjct 26132 AGAAGAGGTCGCGCGCGCGCTGGTCCTCCTTGCCAGTGTTGCGCTTCATGAGCAGGAACT 26191 Query 81323 CCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCCCTTGCG---ACGGC 81379 | | |||||| || ||||| ||||| || |||| ||||| | |||||||| || || Sbjct 26192 CGAAGATGTCGGCGTGCCACGGCTCGAGGTACATGGCGAAGGCGCCCTTGCGCTTACCGC 26251 Query 81380 CACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACCAT 81439 | ||||| | ||||| ||||| || ||| | || || | ||| || |||| || | Sbjct 26252 CGCCCTGATCAACGTAGCGGGCCGTGTTGTTCCACACGCGGATCATCGGCATGAGGCCGT 26311 Query 81440 CTGACTGACCGTTCGTACCCACGAT-ACGCGACC--CCTTGGCGCGCACCTTGCTGAT-T 81495 ||| ||||| || ||| |||| || || || ||||| | ||| ||| | Sbjct 26312 TCGACGTGCCGTTGGTGCCCGCGATGTAGCTGCCGGCC---GCGCGGATGTTGTGGATAT 26368 Query 81496 GAAAGACCGATGCCACCTGACCACTT--TGAAATCTGAGCACACCGGTTCATGGTCTCAT 81553 | | | || ||||| || | | ||| ||| | | |||| || |||| || || | Sbjct 26369 GGATG-CCAATGCCGCCAGCCGCCTTGCTGATCACGGCGCACTCC--TTCAGCGTGTCGT 26425 Query 81554 AAATTCCCTCGATGCTATCTTTTTTCAT---GTCAAGCAAGAAACAGCTTGACATCTGAG 81610 | || ||||||||||| || | ||||| | | || ||| | |||| |||||| | Sbjct 26426 AGATGCCCTCGATGCTGTCGTCCTTCATCGCGACCAGGAAGCACGAGCT---CATCTGCG 26482 Query 81611 GGCTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAA 81656 | | | ||||| ||||| || || ||||| ||||| |||| Sbjct 26483 GCTTGGGGGTACCGGCGTTGAAGAGCGTGGGGGTGGCGTGCGTGAA 26528 >seq782 Length=7656 Score = 170 bits (188), Expect = 2e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || |||||||| ||||||||||| || | || ||||| ||| | | Sbjct 7637 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCCCTGGAGGTGGAGGCGAGC 7578 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || ||||||| || || |||||||||||||| || ||||| |||||| Sbjct 7577 GACACGATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCAG 7518 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || |||||||||||||| || ||||| | ||||| || || ||||| || Sbjct 7517 CAGCGCCTGATCTTTGCTGGTAAGCAGCTGGAGGAGGGCCGTACGCTCGCGGACTACAAC 7458 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || || || || || | ||||| |||||||| Sbjct 7457 ATCCAGAAGGAGTCGACGCTGCACCTGGTGCTCCGTCTGCGCGGTGG 7411 >seq455 Length=15778 Score = 170 bits (188), Expect = 2e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| |||||||| ||||||||||| || | || ||||| ||| | | Sbjct 237 ATGCAGATCTTTGTGAAGACGCTGACCGGCAAGACGATCGCCCTGGAGGTGGAGGCGAGC 178 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || ||||||| || || |||||||||||||| || ||||| |||||| Sbjct 177 GACACGATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCAG 118 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || |||||||||||||| || ||||| | ||||| || || ||||| || Sbjct 117 CAGCGCCTGATCTTTGCTGGTAAGCAGCTGGAGGAGGGCCGTACGCTCGCGGACTACAAC 58 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || || || || || | ||||| ||||| || Sbjct 57 ATCCAGAAGGAGTCGACGCTGCACCTGGTGCTCCGTCTGCGCGGCGG 11 >seq257 Length=25438 Score = 170 bits (188), Expect = 2e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| || |||||||| ||||||||||| || | || ||||| ||| | | Sbjct 22456 ATGCAAATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCCCTGGAGGTGGAGGCGAGC 22397 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || ||||||| || || |||||||||||||| || ||||| |||||| Sbjct 22396 GACACGATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCAG 22337 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || |||||||| ||||| |||||||| | || || || || ||||| || Sbjct 22336 CAGCGCCTGATCTTTGCTGGCAAGCAGCTCGAGGAGGGCCGCACGCTCGCGGACTACAAC 22277 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| || || || || |||| || ||||| || Sbjct 22276 ATCCAGAAGGAGTCCACGCTGCACCTGGTGCTGCGCCTGCGCGGCGG 22230 >seq2803 Length=585 Score = 167 bits (184), Expect = 3e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || |||||||| ||||||||||| || | || ||||| ||| | | Sbjct 240 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCCCTGGAGGTGGAGGCGAGC 181 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || ||||||| || || |||||||||||||| || ||||| |||||| Sbjct 180 GACACGATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCAG 121 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || |||||||||||||| || ||||| | ||||| || || ||||| || Sbjct 120 CAGCGCCTGATCTTTGCTGGTAAGCAGCTGGAGGAGGGCCGTACGCTCGCGGACTACAAC 61 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || || || || || | ||||| ||||| || Sbjct 60 ATCCAGAAGGAGTCGACGCTGCACCTGGTGCTCCGTCTGCGCGGCGG 14 Score = 167 bits (184), Expect = 3e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || |||||||| ||||||||||| || | || ||||| ||| | | Sbjct 468 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCCCTGGAGGTGGAGGCGAGC 409 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || ||||||| || || |||||||||||||| || ||||| |||||| Sbjct 408 GACACGATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCAG 349 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || |||||||||||||| || ||||| | ||||| || || ||||| || Sbjct 348 CAGCGCCTGATCTTTGCTGGTAAGCAGCTGGAGGAGGGCCGTACGCTCGCGGACTACAAC 289 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || || || || || | ||||| ||||| || Sbjct 288 ATCCAGAAGGAGTCGACGCTGCACCTGGTGCTCCGTCTGCGCGGCGG 242 Score = 87.8 bits (96), Expect = 2e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 27517 CCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCA 27576 || ||||||||||| || || |||||||||||||| || ||||| | ||||| || || Sbjct 585 CCGGACCAGCAGCGCCTGATCTTTGCTGGTAAGCAGCTGGAGGAGGGCCGTACGCTCGCG 526 Query 27577 GACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||| || |||| ||||| || || || || || || | ||||| ||||| || Sbjct 525 GACTACAACATCCAGAAGGAGTCGACGCTGCACCTGGTGCTCCGTCTGCGCGGCGG 470 >seq36 Length=60674 Score = 154 bits (170), Expect = 2e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || ||||| ||||| || ||||| || ||||||||||| || | || ||||| ||| | Sbjct 7035 ATCATGCAGATCTTCGTGAAGACTCTGACCGGCAAGACGATCGCCCTCGAGGTCGAGGCG 7094 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 | || | ||| | || ||||||| || || |||||||||||||| || || || ||| Sbjct 7095 AGCGACACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCGGAC 7154 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 |||||||| || || || ||||| ||||| |||||||| | || || || || ||||| Sbjct 7155 CAGCAGCGCCTCATCTTCGCTGGCAAGCAGCTCGAGGAGGGCCGCACGCTCGCGGACTAC 7214 Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || | || ||||| ||||| || || || || |||| || ||||| || Sbjct 7215 AACATTCAGAAGGAGTCCACGCTGCACCTCGTGCTGCGCCTCCGCGGCGG 7264 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570288999102240