Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strigomonas_20culicis_20[genbank_20GCA_5F000482145.1_202013-10-25] 3,002 sequences; 23,587,153 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq455 111 1e-19 seq2803 105 4e-18 seq782 100 2e-16 seq257 98.7 6e-16 seq36 95.1 8e-15 >seq455 Length=15778 Score = 111 bits (122), Expect = 1e-19 Identities = 170/237 (72%), Gaps = 4/237 (2%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 |||||| | ||||| | ||||| || || || |||||| || ||||| || || | Sbjct 10 GCCGCCGCGCAGACGGAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGC 69 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || | || || || || ||||| ||||| || | ||||| |||||||| || Sbjct 70 GAGCGTACGGCCCTCCTCCAGCTGCTTACCAGCAAAGATCAGGCGCTGCTGGTCCGGAGG 129 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTCC 34656 | ||||||||||| |||| || | || ||| | || ||||| |||| |||| Sbjct 130 GATGCCCTCCTTGTCCTGGATC-TTCGCCTTCACGTTCTCGATCGTGTCGCTCGC-CTCC 187 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGATT 34713 || |||| || ||||| || ||||| | ||| |||||||| ||||||||| | ||| Sbjct 188 ACCTCCAGGGCGATCGTCTTGCCGGTCAGCGTCTTCACAAAGATCTGCATGGTAATT 244 >seq2803 Length=585 Score = 105 bits (116), Expect = 4e-18 Identities = 165/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 |||||| | ||||| | ||||| || || || |||||| || ||||| || || | Sbjct 13 GCCGCCGCGCAGACGGAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGC 72 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || | || || || || ||||| ||||| || | ||||| |||||||| || Sbjct 73 GAGCGTACGGCCCTCCTCCAGCTGCTTACCAGCAAAGATCAGGCGCTGCTGGTCCGGAGG 132 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTCC 34656 | ||||||||||| |||| || | || ||| | || ||||| |||| |||| Sbjct 133 GATGCCCTCCTTGTCCTGGATC-TTCGCCTTCACGTTCTCGATCGTGTCGCTCGC-CTCC 190 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || |||| || ||||| || ||||| | ||| ||||| || ||||||||| Sbjct 191 ACCTCCAGGGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATG 241 Score = 105 bits (116), Expect = 4e-18 Identities = 165/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 |||||| | ||||| | ||||| || || || |||||| || ||||| || || | Sbjct 241 GCCGCCGCGCAGACGGAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGC 300 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || | || || || || ||||| ||||| || | ||||| |||||||| || Sbjct 301 GAGCGTACGGCCCTCCTCCAGCTGCTTACCAGCAAAGATCAGGCGCTGCTGGTCCGGAGG 360 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTCC 34656 | ||||||||||| |||| || | || ||| | || ||||| |||| |||| Sbjct 361 GATGCCCTCCTTGTCCTGGATC-TTCGCCTTCACGTTCTCGATCGTGTCGCTCGC-CTCC 418 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || |||| || ||||| || ||||| | ||| ||||| || ||||||||| Sbjct 419 ACCTCCAGGGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATG 469 >seq782 Length=7656 Score = 100 bits (110), Expect = 2e-16 Identities = 158/221 (71%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||| || || || |||||| || ||||| || || | || || || Sbjct 7420 AGACGGAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTACGG 7479 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || || ||||| ||||| || | ||||| |||||||| || | |||||| Sbjct 7480 CCCTCCTCCAGCTGCTTACCAGCAAAGATCAGGCGCTGCTGGTCCGGAGGGATGCCCTCC 7539 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTCCACTTCCACGG 34666 ||||| |||| || | || ||| | || ||||| |||| |||||| |||| || Sbjct 7540 TTGTCCTGGATC-TTCGCCTTCACGTTCTCGATCGTGTCGCTCGC-CTCCACCTCCAGGG 7597 Query 34667 TTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 ||||| || ||||| | ||| ||||| || ||||||||| Sbjct 7598 CGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATG 7638 >seq257 Length=25438 Score = 98.7 bits (108), Expect = 6e-16 Identities = 163/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | || |||| ||||| || || ||| |||||| || ||||| || || | Sbjct 22230 CCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCG 22289 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | || || || || || || ||||| || | ||||| |||||||| || Sbjct 22290 AGCGTGCGGCCCTCCTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGAGGG 22349 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTCCA 34657 | ||||||||||| |||| || | || ||| | || ||||| |||| ||||| Sbjct 22350 ATGCCCTCCTTGTCCTGGATC-TTCGCCTTCACGTTCTCGATCGTGTCGCTCGC-CTCCA 22407 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 | |||| || ||||| || ||||| | ||| ||||| || || |||||| Sbjct 22408 CCTCCAGGGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATTTGCATG 22457 >seq36 Length=60674 Score = 95.1 bits (104), Expect = 8e-15 Identities = 165/235 (70%), Gaps = 4/235 (2%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | || |||| ||| | || || ||| |||||| |||||||| || || | Sbjct 7264 CCGCCGCGGAGGCGCAGCACGAGGTGCAGCGTGGACTCCTTCTGAATGTTGTAGTCCGCG 7205 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | || || || || || || || || || | ||||| ||||||||||| Sbjct 7204 AGCGTGCGGCCCTCCTCGAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCCGGCGGG 7145 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTCCA 34657 | ||||||||||| |||| || | || ||| | || ||||| |||| ||| | Sbjct 7144 ATGCCCTCCTTGTCCTGGATC-TTGGCCTTCACGTTCTCGATGGTGTCGCTCGC-CTCGA 7087 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGAT 34712 | || | || ||||| || ||||| | || ||||| || ||||||||| |||| Sbjct 7086 CCTCGAGGGCGATCGTCTTGCCGGTCAGAGTCTTCACGAAGATCTGCATGATGAT 7032 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314718085027466